BAC Information

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BAC

Clone NameMSMg01-059J18
Chromosome8 (Build37)
Map Location 79,491,854 - 79,631,656
singlet/doubletdoublet
Overlap geneNr3c2
Upstream gene1700007B14Rik, LOC100039185, EG631594, LOC666226, LOC100039211, LOC384847
Downstream geneArhgap10, LOC100039235, AI931714, Tmem34, Ednra, EG622803
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059J18.T7 (MSMg01no059_j18.b1)MSMg01-059J18.TJ (MSMg01no059_j18.g1)
ACCAG286247AG286248
length700701
length of high quality
(start - end)		563 (45 - 607)497 (74 - 570)
definitionCHROMAT_FILE: MSMg01no059_j18.b1 PHD_FILE: MSMg01no059_j18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:09 2005CHROMAT_FILE: MSMg01no059_j18.g1 PHD_FILE: MSMg01no059_j18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,631,097 - 79,631,656)(79,491,854 - 79,492,350)
sequence
ATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGAAGCGCGGAA
TTCATTTACCGAGCCTGTGTGCTTTCAAAATTCCCTACAATAAACTTAAA
CGACCAGTTTTGAAAATAGAATAATTAAAAGCAGAAGGGTCTATGAGACT
GATTTTCTTCAAGCATTTGTGATATAACTCCACTGCTGTGAATTTGGCTC
TGTTTTTCCTTCACACTCACGTATTAACGTTATCATTCACATCTGCAGAC
TATACCCACTCCAGGGGAACAGTTCACTGATTTTTTGGGTTGGGGGGAGG
GCACGTTTATGCAGCTGTACTATCATGAGAAGAGTGATTTGGTTTTGAAC
TGAGAGGAGATTGTGCCCTTGCTGACACGGGAGTGTTCACTTTGTTGTGA
AACAAGTCAGACTTAAACAGTGGGTGGAGTAATCGTACAACTACACTTCA
AAACCAGGCCTACTTTCCTCTTCAGGGAACACTGATAATCCTAAAACCAA
ATTACCACTGAGATTCTGTGAGTCAAGCTCTCTTCTTCTGTTCCACCATC
TTGCTAACACATCCCTCCGTTGCCAAGTCATGATGATGAAATCCCTGTTC
AGTGTGTACCTTTACCAGATAGCTAGGCAACCTGTAGCTCTGAGGCAGCC
CCTCATTGTCCCCCAGAACCAGCAAGTCAGCCCTGTTCTCCCCCCAGCTG


NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTGTTTAGCCCAAGCTGTCACGTACC
CACTTTGTGCTCCATGCTGCCCTTTAACTGGAAATCCTCCTGCTCTCGAT
CCTCAATGTTAGGATGTGCATTGCCTTGGAAAATACTTTCTGGGATGAAG
TTGGGACCAGAGCCATGTTTGTTTGTTTGTTTGTTTGTTTAATGTGTATG
GATGCTGTGTCTGAATGTCTATCTGCAGGTGCCTGGAAGAACATTTGGAT
CCCTGGGACTAGAGTTATGGTTTGAGCCACCATGTGGGTGCTGGGAATAA
AAGCCAGGTTCTCTGGAAGATCAGCTAGGGCTCTTAACCTACGAGTCATC
TCTACAGACCTACCATATCTACTTCTTAAGGGTGTTTGCAAGGCAGCTGC
TTTTCTTCAGTTTTGGAAAGAAATTGCAGTACCCTCTCATTGCTTAACCC
ATAATCCCACTTTATTTCCAAGGTCTTATTTCCTTCTGTAAAGTTACTTC
CTGCCTTTCCTTCTTTTCAATAAAGATCCATCAATCAACAGTGGGAAGTT
GGAAGTCTACATATAATTGATACTGTAAAAACTTATCACTGAACTGATTA
TCATTATTCATTCTACAATTTTCTAAGAGGAATTTATTATCCATTTTAAT
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_j18.b1 MSMg01no059_j18.b1 CHROMAT_FILE:
MSMg01no059_j18.b1 PHD_FILE: MSMg01no059_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:09 2005
         (563 letters)



>mm_chr8_79630894_79631856
          Length = 963

 Score = 1029 bits (532), Expect = 0.0
 Identities = 553/560 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcatttaccgagcctgtgtgctttcaaaattccctacaataaacttaaacgaccag 63
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 763 gaattcatttaccgagtctgtgtgctttcaaaattccctacaataaacttaaacgaccgg 704

                                                                       
Query: 64  ttttgaaaatagaataattaaaagcagaagggtctatgagactgattttcttcaagcatt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 ttttgaaaatagaataattaaaagcagaagggtctatgagactgattttcttcaagcatt 644

                                                                       
Query: 124 tgtgatataactccactgctgtgaatttggctctgtttttccttcacactcacgtattaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 tgtgatataactccactgctgtgaatttggctctgtttttccttcacactcacgtattaa 584

                                                                       
Query: 184 cgttatcattcacatctgcagactatacccactccaggggaacagttcactgattttttg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 cgttatcattcacatctgcagactatacccactccaggggaacagttcactgattttttg 524

                                                                       
Query: 244 ggttggggggagggcacgtttatgcagctgtactatcatgagaagagtgatttggttttg 303
           ||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 523 ggtgggggggagggcacgtttatgcagctgtacaaccatgagaagagtgatttggttttg 464

                                                                       
Query: 304 aactgagaggagattgtgcccttgctgacacgggagtgttcactttgttgtgaaacaagt 363
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 463 aactgagaggagattgtgcccttgctgacacgggagtgttcgctttgttgtgaaacaagt 404

                                                                       
Query: 364 cagacttaaacagtgggtggagtaatcgtacaactacacttcaaaaccaggcctactttc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 cagacttaaacagtgggtggagtaatcgtacaactacacttcaaaaccaggcctactttc 344

                                                                       
Query: 424 ctcttcagggaacactgataatcctaaaaccaaattaccactgagattctgtgagtcaag 483
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 343 ctcttcagggaacactgataatcctaaaaccgaattaccactgagattctgtgagtcaag 284

                                                                       
Query: 484 ctctcttcttctgttccaccatcttgctaacacatccctccgttgccaagtcatgatgat 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ctctcttcttctgttccaccatcttgctaacacatccctccgttgccaagtcatgatgat 224

                               
Query: 544 gaaatccctgttcagtgtgt 563
           ||||||||||||||||||||
Sbjct: 223 gaaatccctgttcagtgtgt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no059_j18.g1 MSMg01no059_j18.g1 CHROMAT_FILE:
MSMg01no059_j18.g1 PHD_FILE: MSMg01no059_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:09 2005
         (497 letters)



>mm_chr8_79491654_79492550
          Length = 897

 Score =  961 bits (497), Expect = 0.0
 Identities = 497/497 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgtttagcccaagctgtcacgtacccactttgtgctccatgctgccctttaactggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgtttagcccaagctgtcacgtacccactttgtgctccatgctgccctttaactggaa 260

                                                                       
Query: 61  atcctcctgctctcgatcctcaatgttaggatgtgcattgccttggaaaatactttctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcctcctgctctcgatcctcaatgttaggatgtgcattgccttggaaaatactttctgg 320

                                                                       
Query: 121 gatgaagttgggaccagagccatgtttgtttgtttgtttgtttgtttaatgtgtatggat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatgaagttgggaccagagccatgtttgtttgtttgtttgtttgtttaatgtgtatggat 380

                                                                       
Query: 181 gctgtgtctgaatgtctatctgcaggtgcctggaagaacatttggatccctgggactaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgtgtctgaatgtctatctgcaggtgcctggaagaacatttggatccctgggactaga 440

                                                                       
Query: 241 gttatggtttgagccaccatgtgggtgctgggaataaaagccaggttctctggaagatca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttatggtttgagccaccatgtgggtgctgggaataaaagccaggttctctggaagatca 500

                                                                       
Query: 301 gctagggctcttaacctacgagtcatctctacagacctaccatatctacttcttaagggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctagggctcttaacctacgagtcatctctacagacctaccatatctacttcttaagggt 560

                                                                       
Query: 361 gtttgcaaggcagctgcttttcttcagttttggaaagaaattgcagtaccctctcattgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtttgcaaggcagctgcttttcttcagttttggaaagaaattgcagtaccctctcattgc 620

                                                                       
Query: 421 ttaacccataatcccactttatttccaaggtcttatttccttctgtaaagttacttcctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttaacccataatcccactttatttccaaggtcttatttccttctgtaaagttacttcctg 680

                            
Query: 481 cctttccttcttttcaa 497
           |||||||||||||||||
Sbjct: 681 cctttccttcttttcaa 697


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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