BAC Information

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BAC

Clone NameMSMg01-059O24
Chromosome8 (Build37)
Map Location 108,382,308 - 108,382,710
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11
Downstream geneNutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059O24.T7 (MSMg01no059_o24.b1)MSMg01-059O24.TJ (MSMg01no059_o24.g1)
ACCAG286499AG286500
length723633
length of high quality
(start - end)		410 (50 - 459)442 (74 - 515)
definitionCHROMAT_FILE: MSMg01no059_o24.b1 PHD_FILE: MSMg01no059_o24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:33 2005CHROMAT_FILE: MSMg01no059_o24.g1 PHD_FILE: MSMg01no059_o24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTCTTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATC
CGCGGAATTCACTTTGTATACCCGGCTGGCCTCAAACTCAGAAATCCGAC
TGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTATGTGCCACCCACGCCC
AGCAGGATGTACTCTTTAACTATTGATTCATCTTTGTAGCTCTGTAGATG
CCTTTTAACATTACCTGTTTCTGTGACTGTTGGGACATGCATGTACTCTA
CCTCCTTAGGCTCTGGCTCTGTTAAACTTGACTATGACTGTAAGCTGGAG
TGAACCCAAAACACCAAGGTCTACTTCCCTTTTTGTCCTTTGGCTCTGAG
TTGGGAAATGGGTCTTGAGAAAGCTGCAGTATTAGCCAAGCATGGTCGAG
CACGCCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGACGGATTTCTGAG
GCCAACTTGGTCTACAGAGTGAGTTCCAGTGAATTCAGCGTCTACTCTCA
TAACTTTTGTCTTTCAATATATTTTTCCTTCTAATCATTTATCACATCCT
ACTTTATCGTTGCTTGTCTGTTCTTGAATACGCGCCTCTTTTTTATTAAT
TATCTACCTCATCTCCCCTTACTATTTTTCTCCCCCATCTTTTTCCTCCC
CTTCTTTTTCCCTCTCCCCTTCCTTTCCCTTCCTTTTCATTATCCCTCTT
TTACTTCACCACCTCTTATTTTN

TTTTTTCCATGCAGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTTGTTTAGATCTATACCCCATTTTT
TAATTGGAATTTTTTTTCTGTTGACGTCTAGTTTCTTGAGTTCTTTATGT
ATTTTGGAATAATGGCCCTTTGTCAGATATGCTATTGATGAAAATATTTT
CCCATTCTATGTTGTCTGTAGGCTTCTGTGTTGTCCTATTGGCAGTGTCC
TTTGCATTACAGAAGCTTTTCAGTTTCATGAAGTCCCATTTATTGTCAAC
CTTAGTGTTTGAGCTATCGGTGTTCTGTTCAGGAAGTTGTCTCCTGTGAC
AATAAGTTCAAGGCTATGTCCAATTTGGATATTCTCTCTGTCTTGTAGTT
AGTTTGGATAAGTGTTTGTCAATCTTGTTGATTTTCTCAAAGAACCAACT
CTTTATTTCACTGATTCTTTGTATTGTTCTCCTTGTTTCTAATTGATAGA
TTTCAGCCCGAGTTTGGTTATTTCCCACCTTCCACTACTCTTGGGTGTTT
GCTTCTTTTTGTTCTAGAGCTTTCAGGTGCACTGTTATTGTGCTGGTATG
AGATATTTCTTAATTTCTTTATGAAGGCCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_o24.b1 MSMg01no059_o24.b1 CHROMAT_FILE:
MSMg01no059_o24.b1 PHD_FILE: MSMg01no059_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:33 2005
         (410 letters)



>mm_chr8_108382104_108382913
          Length = 810

 Score =  733 bits (379), Expect = 0.0
 Identities = 397/403 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattcactttgtatacccggctggcctcaaactcagaaatccgactgcctctgcctcc 64
           ||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 205 ggaattcactttgtagaccaggctggcctcaaactcagaaatccaactgcctctgcctcc 264

                                                                       
Query: 65  caagtgctgggattaaaggtatgtgccacccacgcccagcaggatgtactctttaactat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caagtgctgggattaaaggtatgtgccacccacgcccagcaggatgtactctttaactat 324

                                                                       
Query: 125 tgattcatctttgtagctctgtagatgccttttaacattacctgtttctgtgactgttgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgattcatctttgtagctctgtagatgccttttaacattacctgtttctgtgactgttgg 384

                                                                       
Query: 185 gacatgcatgtactctacctccttaggctctggctctgttaaacttgactatgactgtaa 244
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gacatgcgtgtactctacctccttaggctctggctctgttaaacttgactatgactgtaa 444

                                                                       
Query: 245 gctggagtgaacccaaaacaccaaggtctacttccctttttgtcctttggctctgagttg 304
           |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 445 gctggagtgaacccaagacaccagggtctacttccctttttgtcctttggctctgagttg 504

                                                                       
Query: 305 ggaaatgggtcttgagaaagctgcagtattagccaagcatggtcgagcacgcctttaatc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggaaatgggtcttgagaaagctgcagtattagccaagcatggtcgagcacgcctttaatc 564

                                                      
Query: 365 ccagcactcaggaggcagaggcagacggatttctgaggccaac 407
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccagcactcaggaggcagaggcagacggatttctgaggccaac 607


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space:   321201
Effective search space used:   321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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