BAC Information

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BAC

Clone NameMSMg01-060E06
Chromosome8 (Build37)
Map Location 114,131,472 - 114,226,265
singlet/doubletdoublet
Overlap geneZnrf1, Ldhd, Zfp1, Ctrb1
Upstream geneHydin, Vac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl, Fa2h, Wdr59
Downstream geneBcar1, Cfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498, LOC100042040, Cntnap4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060E06.T7 (MSMg01no060_e06.b1)MSMg01-060E06.TJ (MSMg01no060_e06.g1)
ACCAG286749AG286750
length736741
length of high quality
(start - end)
184 (65 - 248)376 (75 - 450)
definitionCHROMAT_FILE: MSMg01no060_e06.b1 PHD_FILE: MSMg01no060_e06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:57 2005CHROMAT_FILE: MSMg01no060_e06.g1 PHD_FILE: MSMg01no060_e06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,131,472 - 114,131,655)(114,225,891 - 114,226,265)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCACAGATCCGCGGAATTCCT
CCTCTTTCTTTTCCGTAATAAAACTGAGGAGGGCGGGGTATATTATTAGC
CAAGGTCTCAAGTCTAGAAAACCCCATTATGTTGTCCTTCTCTGCTCACA
ACTGCATGTTGAAATGTTTGGCCTTTTATCTCTTTCTTTAAAAAAATGTT
GCAGGATAGGCAGAGGCAGGTAGATCTGTAAGTTCAAGGCCAGCCTAGTC
TACATAGCAAGGACTACCCAGTGAGACTCTGCCTCAAAAAGCGCACAGGA
TGGGCTGCTGAGATGCCTCAGTGGCTAAGAGCACCCGACTGCCCTTCCAA
AGGTCCAGATTTCTCATCCCCGCACCCACATGGCGGCTCACAACCATCTG
TAACAAGATCCGACTCCCTTTCCTGCAGTGTCTGAACATCGCTACTGTGC
TTCTTTCTTGTACCTTCATCTTTCCCTTTTCCTCCCCTCTCCTCACGTCC
CTATCCTCATCGTCAGCCCCATTTTATAAATCGCCCCCTTCATCCTTTTC
CTCCCCTCTAATTCGCTTTTTCCTTATTTTCCATTTCACCACCCCCTCTC
TCTCTTCTTCCCAATTCCCCCCCCCTTTCCTTTCCCATCCCTATCTCTCT
TCCTCCCCCTCCTCTTAATTTCCTTCTCTCCCCTTCCTTTCCCCGTTCCT
CTTCATTTCCGTACCTCTTTTCTTTTTTCCCTCTTT
ACTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGTCACTCATCCGTCACACGTTTTCA
CACCTTGTCCTGCATGCCAATCCTGTGAAGCTGGCAGGGATGTGACCATT
ACTTCAGTTGCTGACACTGAGACTCCTTGCTAGTCCAAACCCCAGACCTG
CCACCCTCTTCACACTCAGTGACTTGCCAGGGCTGAGGAGCTAGCAGGAG
TCTGAGTTATCATGCCAAGCGCAGGTCACTCTGAGTTAATCCCCCAAGGT
GAGCAACTTCTCAGAGGAGGAGGAGGGGCCTGGGATTGGCTGGGCATGAG
GGAGAGGATGAGACGAGTAGCTGCCAGCTTCTGGGTCTAGGACCAGGCAT
ATGATTCAGAGCCATCCTCCTGCAACCCCATTGTAGAGACAGCACTGGGC
GAGACTCAGAAAAAGACTTCCTTTGGGGCTCTCCCACCCCCCTTAAGGGG
GGAAAAGCTCAAAGGGAAAATGGGCCCGGCCCGGCCCACAAGCCAGGGGT
GGGCAATTTACCCACAGGGGGGGGCCAAAAAAAGGGCCCCCCCCGAGAAG
GAGCCCCCCCGCGAAAAACCTTGGGGGCCCTATAAACCCCAACACCTATA
TCCGCGTTTCTTTGGCGCCCCACCTCTCTAACAACTTTTTTAAAAATTTC
CGCCCCGCCCGCTCCGGGCCCCCATTCTCCACCTTCAAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_e06.b1 MSMg01no060_e06.b1 CHROMAT_FILE:
MSMg01no060_e06.b1 PHD_FILE: MSMg01no060_e06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:57 2005
         (184 letters)



>mm_chr8_114131272_114131855
          Length = 584

 Score =  348 bits (180), Expect = e-100
 Identities = 183/184 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtaataaaactgaggagggcggggtatattattagccaaggtctcaagtctagaaaaccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtaataaaactgaggagggcggggtatattattagccaaggtctcaagtctagaaaaccc 260

                                                                       
Query: 61  cattatgttgtccttctctgctcacaactgcatgttgaaatgtttggccttttatctctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattatgttgtccttctctgctcacaactgcatgttgaaatgtttggccttttatctctt 320

                                                                       
Query: 121 tctttaaaaaaatgttgcaggataggcagaggcaggtagatctgtaagttcaaggccagc 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctttaaaacaatgttgcaggataggcagaggcaggtagatctgtaagttcaaggccagc 380

               
Query: 181 ctag 184
           ||||
Sbjct: 381 ctag 384


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 584
Length adjustment: 8
Effective length of query: 176
Effective length of database: 576
Effective search space:   101376
Effective search space used:   101376
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no060_e06.g1 MSMg01no060_e06.g1 CHROMAT_FILE:
MSMg01no060_e06.g1 PHD_FILE: MSMg01no060_e06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:58 2005
         (376 letters)



>mm_chr8_114225691_114226466
          Length = 776

 Score =  663 bits (343), Expect = 0.0
 Identities = 367/375 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtcactcatccgtcacacgttttcacaccttgtcctgcatgccaatcctgtgaagctgg 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tgtcactcatctgtcacacgttttcacaccttgtcctgcatgccaatcctgtgaagctgg 516

                                                                       
Query: 61  cagggatgtgaccattacttcagttgctgacactgagactccttgctagtccaaacccca 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 515 cagggatgtgaccattacttcagttgctgacactgagactccgtgctagtccaaacccca 456

                                                                       
Query: 121 gacctgccaccctcttcacactcagtgacttgccagggctgaggagctagcaggagtctg 180
           ||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 455 gacctactaccctcttcacactcagtgacttgccagggctgaggagctagcgggagtctg 396

                                                                       
Query: 181 agttatcatgccaagcgcaggtcactctgagttaatcccccaaggtgagcaacttctcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 agttatcatgccaagcgcaggtcactctgagttaatcccccaaggtgagcaacttctcag 336

                                                                       
Query: 241 aggaggaggaggggcctgggattggctgggcatgagggagaggatgagacgagtagctgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aggaggaggaggggcctgggattggctgggcatgagggagaggatgagacgagtagctgc 276

                                                                       
Query: 301 cagcttctgggtctaggaccaggcatatgattcagagccatcctcctgcaaccccattgt 360
           |||||||||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct: 275 cagcttctgggtctggggccgggcatatgattcagagccatcctcctgcaaccccattgt 216

                          
Query: 361 agagacagcactggg 375
           |||||||||||||||
Sbjct: 215 agagacagcactggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space:   281489
Effective search space used:   281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)