Query= MSMg01no060_g18.b1 MSMg01no060_g18.b1 CHROMAT_FILE:
MSMg01no060_g18.b1 PHD_FILE: MSMg01no060_g18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:09 2005
(231 letters)
>mm_chr8_52473088_52473718
Length = 631
Score = 418 bits (216), Expect = e-121
Identities = 228/232 (98%), Gaps = 2/232 (0%)
Strand = Plus / Plus
Query: 1 aaattctactgtcagatcatagccatgag-tttttttttcattaatgacatgatttattt 59
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 201 aaattctactgtcagatcatagccatgagttttttttttaattaatgacatgatttattt 260
Query: 60 attttggtaggaaaatcacattatcaagttaaccatgtgatgagaaagctggagcttgga 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attttggtaggaaaatcacattatcaagttaaccatgtgatgagaaagctggagcttgga 320
Query: 120 ataaaatgctatctacctggtcctagataaaggagttcaggcagatagtgagtttaaaca 179
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataaaatgctatccacctggtcctagataaaggagttcaggcagatagtgagtttaaaca 380
Query: 180 aaatgctcaagattcccataattaaaattttcaggtatatcacatctaaata 231
|| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aa-tgctcaagattcccataattaaaattttcaggtatatcacatctaaata 431
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space: 138084
Effective search space used: 138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no060_g18.g1 MSMg01no060_g18.g1 CHROMAT_FILE:
MSMg01no060_g18.g1 PHD_FILE: MSMg01no060_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:09 2005
(556 letters)
>mm_chr8_52577084_52578039
Length = 956
Score = 917 bits (474), Expect = 0.0
Identities = 486/490 (99%)
Strand = Plus / Minus
Query: 67 gtaggttgtcaatttgtcttattgactatttcctttgtcttacagaagttttccagtttc 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956 gtaggttgtcaatttgtcttattgactatttcctttgtcttacagaagttttccagtttc 897
Query: 127 atgaggtcccatttatcaattgctgatcttagagcatgtcattggagttctgtttaggaa 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 atgaggtcccatttatcaattgctgatcttagagcatgtcattggagttctgtttaggaa 837
Query: 187 atttccctctgagccaatgagatcaaggatatttcccactttcttttcaattagatccag 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 atttccctctgagccaatgagatcaaggatatttcccactttcttttcaattagatccag 777
Query: 247 attatctggctttattttaacatttaaaattacaggttgaccccaacaaagtaatagtag 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 attatctggctttattttaacatttaaaattacaggttgaccccaacaaagtaatagtag 717
Query: 307 tgtaatttcaatacctcatatttacaaatgagaagattgtatgcatcaagtctgaacaaa 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 tgtaatttcaatacctcatatttacaaatgagaagattgtatgcatcaagtctgaacaaa 657
Query: 367 tgtactcaagaattctataatatggatataaaactacagattataatctaccaaacattt 426
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 656 tgtactcaagaattctataaaatggatataaaactacagattataatctacaaaacattt 597
Query: 427 tgcccaaaacccaaaaatcaaggctcaaaattctgtggctataactccaaagtaaagctc 486
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tgcccaaaacccaaaaatcaaggctcaaaattctgtggctataactccaaagtaaagctt 537
Query: 487 gcttattgaaatcatgtcctgtatcctatcggaaaaaacagactaaagtttgacatcaac 546
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 536 gcttattgaaatcatgtcctgtatcctatcagaaaaaacagactaaagtttgacatcaac 477
Query: 547 ctcaatagaa 556
||||||||||
Sbjct: 476 ctcaatagaa 467
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
