Query= MSMg01no060_h06.b1 MSMg01no060_h06.b1 CHROMAT_FILE:
MSMg01no060_h06.b1 PHD_FILE: MSMg01no060_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:11 2005
(291 letters)
>mm_chr8_61011823_61012513
Length = 691
Score = 534 bits (276), Expect = e-156
Identities = 282/284 (99%)
Strand = Plus / Plus
Query: 1 aattccatccattactgaccaaaataattgccttaataattttggagaacagtttggtag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattccatccattactgaccaaaataattgccttaataattttggagaacagtttggtag 260
Query: 61 agcttatgaaatgtcttccttaaacatacaaatgtattagctgatatattcctaataaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcttatgaaatgtcttccttaaacatacaaatgtattagctgatatattcctaataaaa 320
Query: 121 tattgtgtctggcccatggccatacataaaaattgtttatagatagattatacattataa 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattgtgtctggcccatggccacacataaaaattgtttatagatagattatacattataa 380
Query: 181 ctgcaatatagaaaacatccaaatacccagaaatagaatgttgtacaaaattaaacaaca 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 ctgcaatatagaaaacatccaaatacccagaaatagaatgttgtagaaaattaaacaaca 440
Query: 241 taaatatgaatcaattggttttgcaagttgacaataattaattt 284
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaatatgaatcaattggttttgcaagttgacaataattaattt 484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no060_h06.g1 MSMg01no060_h06.g1 CHROMAT_FILE:
MSMg01no060_h06.g1 PHD_FILE: MSMg01no060_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:11 2005
(508 letters)
>mm_chr8_61091199_61092106
Length = 908
Score = 518 bits (268), Expect = e-151
Identities = 366/438 (83%), Gaps = 63/438 (14%)
Strand = Plus / Minus
Query: 1 tttgctgatttccatgaatctgacagactccactttcctcatttttccaaagatcccttc 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 438 tttgctgatttccatgaatctgacagactccactttcctcattttcccaaagatcccttc 379
Query: 61 tatatgtcagaccattgaaatttaaaatgcacacacatgttttttaaccatagaatcttc 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 378 tatatgtcagaccattgaaatttaaaatgcacacacatattttttaaccatagaatcttc 319
Query: 121 aaagtacattaaatgggcccatatttcactttgaaaattccctgaataatacaacagact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aaagtacattaaatgggcccatatttcactttgaaaattccctgaataatacaacagact 259
Query: 181 gaaacataacatcctttgattccaaattataattgcttgtgtcagacaagatttggtcat 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gaaatataacatcctttgattccaaattataattgcttgtgtcagacaagatttggtcat 199
Query: 241 ---ttta------aaata------------------------------------------ 249
|||| |||||
Sbjct: 198 ttatttacctagtaaatatgaaaacatagagatttatgataaaaacattgaacaatctta 139
Query: 250 ----aaaaataaaattttccatagaaaacataccaactgtttgccttttatagctgaaat 305
|||||||| ||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 138 aggtaaaaataacattttccatagaaaacatattaactgtttgcctttcatagctgaaat 79
Query: 306 ctacttgtaaaatatatta--------aaataaaatttaaacacagatatctaaatatat 357
||||||||||||||| ||| ||||||||||||||||||||||| |||||||||
Sbjct: 78 ctacttgtaaaatatgttaaaatcttgaaataaaatttaaacacagatatttaaatatat 19
Query: 358 ttattccagctagataat 375
||||||||||||||||||
Sbjct: 18 ttattccagctagataat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
