BAC Information

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BAC

Clone NameMSMg01-060P19
Chromosome8 (Build37)
Map Location 115,841,248 - 115,908,252
singlet/doubletdoublet
Overlap genenone
Upstream geneCntnap4, LOC100042061
Downstream geneMon1b, 4930481F22Rik, Adamts18, Nudt7, AI427515
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060P19.T7 (MSMg01no060_p19.b1)MSMg01-060P19.TJ (MSMg01no060_p19.g1)
ACCAG287303AG287304
length691685
length of high quality
(start - end)
550 (142 - 691)553 (94 - 646)
definitionCHROMAT_FILE: MSMg01no060_p19.b1 PHD_FILE: MSMg01no060_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:51 2005CHROMAT_FILE: MSMg01no060_p19.g1 PHD_FILE: MSMg01no060_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,841,248 - 115,841,797)(115,907,700 - 115,908,252)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTCTCCCCCAGCTGCAGAAACCCACCCTCTCCTTCTATTTTTAATCC
TTTGCTGACTCTAGAGGCTTTCTACTAAGTCGTTTGTCGTTGAACAGTTG
TTCTCCAAGCAGCTGCCAAGAAGCCCGGCATTTGCAGCCTTGAGTTGTGT
CCCATATTGGCCCAGTCCCAAATGTCATTTCCTACAAGGCTTTTCTTTCA
ACCGATGCATTAGGATCTTTGAATGAGAACACCAAATTAAATAGAAAATG
ACATTCATGAGAAAAGATGTTCCTTCCCAATACCCGAGACTCTCTCCCCA
TCTGTCATTGCTCTCTTTTCTGCCTGTCTCTTGGTATTCCAAAACTCCCA
AGGAGTCAAATACCAATGTAATCAGCAGAGGATTTTTGCACATCAATGTA
AATTAAGCATTGGCAACCCATAAAACATTCTGCTCAGACTGGTTGATGTC
CTCCAGTAGAAGGGGATACGATGTCTAGAAGATACATAGGCCAACCACTA
TCCTTCCTTCAGCTCTCTGCTAAAATTACCATGAAGTGGTTCCCCCCAGA
ACATCAAGAATGCATATTCCTTCATTGCTTTGAAGACTTTTGCAATTTTT
TTATTTATAAGTTTTCTTTTATCTTAAATTATGAGTATGTA
NNTTTTTTTNNNNNCTACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAAATT
CTGCCTTGGGCACAGAGAACAATCTTCAGTGCATGTCCCATGGTTACCTG
CTGTGTGAACTTTACAGTACAAAGGCACCACGGTGTACTAAACTGGCAGG
TGGGGATTGTCCCATGATCCTGGTATTTCAGGACTGCCCCTTTGATGGCC
ATTATCACGCATGACCCACAGAGCTGGCCAGGCTCCCATGTGGTTGGTTC
TGAACATTTTTGAGATAACACCTCTAGGCAGGAGTCAGGTCAAAACCAGC
TCCTGCCGTTGAGGTCTTTTTTCCAACCGAGTTAAATGTTTGACAGAGAA
GTTGAAAGCCTGCAGCCCAGAGGACCACAACATGAACGCCTGTTTATGTT
TCGATGATTTACTTAGCTGGTTTTTCCTCTCCTGTTAATGCTGAAGTTTT
TAGTGATCTTGTGTCAGATAGTTTATTGGGTGCAGTTTCACCTTTATTGT
ATAACTAATCGCTTTCCTTATATTCAGGGGACAATTTCCCTTTCATCATC
ATCACCAAGATACTAAACCAGCTTTGATTTAGCATCTTTATTAGGATAGA
GCGACAACAGCTATTTCCCCTGCACACCCATGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_p19.b1 MSMg01no060_p19.b1 CHROMAT_FILE:
MSMg01no060_p19.b1 PHD_FILE: MSMg01no060_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:51 2005
         (550 letters)



>mm_chr8_115841048_115841997
          Length = 950

 Score =  978 bits (506), Expect = 0.0
 Identities = 539/550 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaacagttgttctccaagcagctgccaagaagcccggcatttgcagccttgagttgtgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaacagttgttctccaagcagctgccaagaagcccggcatttgcagccttgagttgtgtc 260

                                                                       
Query: 61  ccatattggcccagtcccaaatgtcatttcctacaaggcttttctttcaaccgatgcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 ccatattggcccagtcccaaatgtcatttcctacaaggcttttctttcaactgatgcatt 320

                                                                       
Query: 121 aggatctttgaatgagaacaccaaattaaatagaaaatgacattcatgagaaaagatgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggatctttgaatgagaacaccaaattaaatagaaaatgacattcatgagaaaagatgtt 380

                                                                       
Query: 181 ccttcccaatacccgagactctctccccatctgtcattgctctcttttctgcctgtctct 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 ccttcccaatacccaagactctctccccatctgtcattgctctcttttctgtctgtctct 440

                                                                       
Query: 241 tggtattccaaaactcccaaggagtcaaataccaatgtaatcagcagaggatttttgcac 300
           ||||||||||||| |||||||||||||||||  ||||||||||||||||||||||| |||
Sbjct: 441 tggtattccaaaaatcccaaggagtcaaatataaatgtaatcagcagaggatttttacac 500

                                                                       
Query: 301 atcaatgtaaattaagcattggcaacccataaaacattctgctcagactggttgatgtcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcaatgtaaattaagcattggcaacccataaaacattctgctcagactggttgatgtcc 560

                                                                       
Query: 361 tccagtagaaggggatacgatgtctagaagatacataggccaaccactatccttccttca 420
           ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 561 tccagtagaaggggatacgatgtatggaagatacataggccaaccactatccttccttca 620

                                                                       
Query: 421 gctctctgctaaaattaccatgaagtggttccccccagaacatcaagaatgcatattcct 480
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 621 gctctctgctaaaattaccatgaagtggttccccccaaaacatcaagaatgcatattcct 680

                                                                       
Query: 481 tcattgctttgaagacttttgcaatttttttatttataagttttcttttatcttaaatta 540
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 681 tcattgctttgaagacttttgcaatttatttatttataagttttcttttatcttaaatta 740

                     
Query: 541 tgagtatgta 550
           ||||||||||
Sbjct: 741 tgagtatgta 750


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no060_p19.g1 MSMg01no060_p19.g1 CHROMAT_FILE:
MSMg01no060_p19.g1 PHD_FILE: MSMg01no060_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:51 2005
         (553 letters)



>mm_chr8_115907500_115908452
          Length = 953

 Score = 1007 bits (521), Expect = 0.0
 Identities = 545/553 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaaattctgccttgggcacagagaacaatcttcagtgcatgtcccatggttacctgctg 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 753 agaaattctgccttgggcacagagaacaatcctcagtgcatgtcccatggttacctgctg 694

                                                                       
Query: 61  tgtgaactttacagtacaaaggcaccacggtgtactaaactggcaggtggggattgtccc 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 693 tgtgaactttacagtacaaaggcaccacagtgtactaaactggcaggtggggattgtccc 634

                                                                       
Query: 121 atgatcctggtatttcaggactgcccctttgatggccattatcacgcatgacccacagag 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 633 atgatcctggtatttcaggactgcccctttgatggccattatcacgcatgactcacagag 574

                                                                       
Query: 181 ctggccaggctcccatgtggttggttctgaacatttttgagataacacctctaggcagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ctggccaggctcccatgtggttggttctgaacatttttgagataacacctctaggcagga 514

                                                                       
Query: 241 gtcaggtcaaaaccagctcctgccgttgaggtcttttttccaaccgagttaaatgtttga 300
           ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 513 gtcaggtcaaagccagctcctgccgttgaggtcttttttccaacggagttaaatgtttga 454

                                                                       
Query: 301 cagagaagttgaaagcctgcagcccagaggaccacaacatgaacgcctgtttatgtttcg 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 453 cagagaagttgaaagcctgcagcccagaggaccacaacatgaaggcctgtttatgtttcg 394

                                                                       
Query: 361 atgatttacttagctggtttttcctctcctgttaatgctgaagtttttagtgatcttgtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 atgatttacttagctggtttttcctctcctgttaatgctgaagtttttagtgatcttgtg 334

                                                                       
Query: 421 tcagatagtttattgggtgcagtttcacctttattgtataactaatcgctttccttatat 480
           ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 333 tcagatagtttattgggtgcagttttacctttattgtataactaattgctttccttatat 274

                                                                       
Query: 481 tcaggggacaatttccctttcatcatcatcaccaagatactaaaccagctttgatttagc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tcaggggacaatttccctttcatcatcatcaccaagatactaaaccagctttgatttagc 214

                        
Query: 541 atctttattagga 553
           |||||||||||||
Sbjct: 213 atctttattagga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space:   512049
Effective search space used:   512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)