BAC Information

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BAC

Clone NameMSMg01-061K08
Chromosome8 (Build37)
Map Location 115,540,608 - 115,540,934
singlet/doubletsinglet
Overlap genenone
Upstream geneTerf2ip, LOC672498, LOC100042040, Cntnap4, LOC100042061
Downstream geneMon1b, 4930481F22Rik, Adamts18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061K08.T7 (MSMg01no061_k08.b1)MSMg01-061K08.TJ (MSMg01no061_k08.g1)
ACCAG287807AG287808
length717733
length of high quality
(start - end)
348 (63 - 410)328 (73 - 400)
definitionCHROMAT_FILE: MSMg01no061_k08.b1 PHD_FILE: MSMg01no061_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:41 2005CHROMAT_FILE: MSMg01no061_k08.g1 PHD_FILE: MSMg01no061_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAGAAGATCCGCGGAATTC
TTCATGTCACACATGTATTGGTTTGCTTTACATTGTGTTGTGGATCTCCT
CTTGTCGTGACTCCAGAGAGAGAAATGCACTAAAAAAAATTAAAAATAAA
TAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAATGTCTAG
TGGTGTTCTGGCGGCTTCTTGCCACACTGCCTTGGTCTTGGGCCGATTGG
CAAAGTGATGTCAGGTGATAACAGACTCACATGGTAAGGCAAGGCCCATT
GGAGAACACGTGATGTTTGGAGGGAGTATAAAGAGAACTCAGTGGACAGT
GACAGTGGCTTGCTTGCATAGCTAGCTTTACAACACTCCACTGGTCTCTC
AGCTTTGCAGAGAGAGGTACAGTCGAGAGCTTCTCCTGGCACCCCTGACG
CTCCTTGGTTGCTCTTGTTGACTCGAGCCAATTGGGCTGAGTCCTGGCTC
TATCTGCTGTGTCATGCCACCTTGCTGATTTGTGTTTGCTAACTTAACCC
TATTGAACTGCACCGATGCTATATTCCTGACGTATTATGGAATGCATTAT
ACCTGCCCCTTTTTAATTCTGTGATCTCAACTGTTGGCTTTCTGAAAAAC
AGATTGGAATTTGCTTTAAACCCCATTTTTCATCTATTCCCACTTTCTCC
CTTAACTCAATAAACTT
ACXXXXXXXXXXXXXXXXXXXXXXXXXGTTCTGCACTAGGAGGTGACACT
ATAGAATTTTCTCCAGAAATATCCATTCTGCTATTTAAAGTTAGTTCTTA
GGATCTGAGAGCCTGGAAGGTAAGGAACTTTGATATTATCAGAACACACT
GAGCTGACCAAAGATAATGGAAAACAACTCATGACCTACTTTAGGTGAAG
ACATATATTTTGATTTTTTTGTCATATTTGAAGTTGTTTTGATCTCTATA
CATAAAATCATTTAATAAATACAATTTAGAACCACAAGGTCTTAATTTTT
AAAGCTGCCTTTGAATTTATCTTGTAGGGATAGAATGTACACAGACAAAG
AACAGGCTCTATGCACATGCACACTGGGACATATAGTTGCAAATGGCATC
CATGTATAACCAGCATTCACAGCAAGAATCTAAATATCACCAATGTTCCT
ACTTGATAATATCTGATAATTTGTAGGTAATGTAGTTAGTTGTGTGCTCC
CTGTTCATTTGTCTTTTACAGTTGATGCTCAGTACCATAGGTGGTTTGCG
CCTCCTCATAACCTTGCCAATACTTTCTCTTATTCTTTTGTCCTTCTATT
AGCCACGCCTATGACCCACATCTTAATTTTAACTTCGCATTTAGCTGAAG
ACCAATTGACCCCCGCCCCCCTTTTGAGGTCGCGGCGCCCTGGGCCTTGT
ACACTGTAACTCGCCCAGTAGTCCAACCATCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_k08.g1 MSMg01no061_k08.g1 CHROMAT_FILE:
MSMg01no061_k08.g1 PHD_FILE: MSMg01no061_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:41 2005
         (328 letters)



>mm_chr8_115540408_115541135
          Length = 728

 Score =  609 bits (315), Expect = e-179
 Identities = 324/327 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccattctgctatttaaagttagttcttaggatctgagagcctggaaggtaaggaactttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccattctgctatttaaagttagttcttaggatctgagagcctggaaggtaaggaactttg 260

                                                                       
Query: 61  atattatcagaacacactgagctgaccaaagataatggaaaacaactcatgacctacttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atattatcagaacacactgagctgaccaaagataatggaaaacaactcatgacctacttt 320

                                                                       
Query: 121 aggtgaagacatatattttgatttttttgtcatatttgaagttgttttgatctctataca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggtgaagacatatattttgatttttttgtcatatttgaagttgttttgatctctataca 380

                                                                       
Query: 181 taaaatcatttaataaatacaatttagaaccacaaggtcttaatttttaaagctgccttt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 taaaatcatttaataaatacaatttagaaccacaaggtcttaatttttaaagttgccttt 440

                                                                       
Query: 241 gaatttatcttgtagggatagaatgtacacagacaaagaacaggctctatgcacatgcac 300
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaaatatcttgtagggatagaatgtacacagacaaagaacaggctctatgcacatgcac 500

                                      
Query: 301 actgggacatatagttgcaaatggcat 327
           |||||||||||||||||||||||||||
Sbjct: 501 actgggacatatagttgcaaatggcat 527


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)