BAC Information

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BAC

Clone NameMSMg01-061M06
Chromosome8 (Build37)
Map Location 115,540,607 - 115,541,116
singlet/doubletsinglet
Overlap genenone
Upstream geneTerf2ip, LOC672498, LOC100042040, Cntnap4, LOC100042061
Downstream geneMon1b, 4930481F22Rik, Adamts18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061M06.T7 (MSMg01no061_m06.b1)MSMg01-061M06.TJ (MSMg01no061_m06.g1)
ACCAG287898AG287899
length737739
length of high quality
(start - end)
657 (34 - 690)510 (60 - 569)
definitionCHROMAT_FILE: MSMg01no061_m06.b1 PHD_FILE: MSMg01no061_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:50 2005CHROMAT_FILE: MSMg01no061_m06.g1 PHD_FILE: MSMg01no061_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCATGG
CACACATGTATTGGTTTGCTTTACATTGTGTTGTGGATCTCCTCTTGTCG
TGACTCCAGAGAGAGAAATGCACTAAAAAAAATTAAAAATAAATAAATAA
ATAAATAAATAAATAAATAAATAAATAAATAAATAATGTCTAGTGGTGTT
CTGGCGGCTTCTTGCCACACTGCCTTGGTCTTGGGCCGATTGGCAAAGTG
ATGTCAGGTGATAACAGACTCACATGGTAAGGCAAGGCCCATTGGAGAAC
ACGTGATGTTTGGAGGGAGTATAAAGAGAACTCAGTGGACAGTGACAGTG
GCTTGCTTGCATAGCTAGCTTTACAACACTCCACTGGTCTCTCAGCTTTG
CAGAGACAGGTACAGTCGAGAGCTTCTCCTGGCATCCCTGGTGGTCCTTG
GTTGCTCTTGTTGACTCGGGCCAATTGGGTTGAGTCCTGGCTCTATCTGC
TGGGTCATGCCACCTTGCTGATTTGTGTTTGCTAGCTTAACCCTACTGAA
CTGGACCGATGGTATATTCATGAAGTAGTAGGGAATGGATCAAAGCTGCC
CCTGCTGAATCCTGTGAGCTGAACTGCTGGCTTCCTGACAACACAGATTG
CATTTGCTTCAAAGTACAATTTCTATACAGGCCCACTTCTCTCAGATCCC
AATAACCTTTCTTTTCCACTACCTCTGGAGGGTGGCG
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTT
TCGCGAAAATCCATTCTGCTATTTAAAGTTAGTTCTTAGGATCTGAGAGC
CTGGAAGGTAAGGAACTTTGATATTATCAGAACACACTGAGCTGACCAAA
GATAATGGAAAACAACTCATGACCTACTTTAGGTGAAGACATATATTTTG
ATTTTTTTGTCATATTTGAAGTTGTTTTGATCTCTATACATAAAATCATT
TAATAAATACAATTTAGAACCACAAGGTCTTAATTTTTAAAGTTGCCTTT
GAAAATATCTTGTAGGGATAGAATGTACACAGACAAAGAACAGGCTCTAT
GCACATGCACACTGGGACATATAGTTGCAAATGGCATTCATGTATAACCA
GCATTCACAGCAAGAATCTAAATATCACCAATGTTCCTACTTGATAATAT
CTGATAATTTGTAGGTAATGTAGTTAGTTGTGTGCTCCCTGTTCATTTGT
CTTTTACAGCTGATGCTCAGTAGTATAGGTGGTTTGGGTTTCCTCATAAT
CATGCCAATACTTTTTCTTATTCTTTTGTCACTCTAGTAGACCCGCGTAT
GAAATATATCTTAACTTTAACTCGCATTTACCTGAATGACCTTTGAAGCT
GCCCACCTTTGAAGCTCGGGGGCGCCCTGGCCTTGAACACTGAACTGCAA
GCAGTCTAACATCCATTGGTACCCCCAACTGGTTCCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_m06.g1 MSMg01no061_m06.g1 CHROMAT_FILE:
MSMg01no061_m06.g1 PHD_FILE: MSMg01no061_m06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:50 2005
         (510 letters)



>mm_chr8_115540407_115541316
          Length = 910

 Score =  963 bits (498), Expect = 0.0
 Identities = 507/510 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccattctgctatttaaagttagttcttaggatctgagagcctggaaggtaaggaacttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccattctgctatttaaagttagttcttaggatctgagagcctggaaggtaaggaacttt 260

                                                                       
Query: 61  gatattatcagaacacactgagctgaccaaagataatggaaaacaactcatgacctactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatattatcagaacacactgagctgaccaaagataatggaaaacaactcatgacctactt 320

                                                                       
Query: 121 taggtgaagacatatattttgatttttttgtcatatttgaagttgttttgatctctatac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taggtgaagacatatattttgatttttttgtcatatttgaagttgttttgatctctatac 380

                                                                       
Query: 181 ataaaatcatttaataaatacaatttagaaccacaaggtcttaatttttaaagttgcctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataaaatcatttaataaatacaatttagaaccacaaggtcttaatttttaaagttgcctt 440

                                                                       
Query: 241 tgaaaatatcttgtagggatagaatgtacacagacaaagaacaggctctatgcacatgca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaaaatatcttgtagggatagaatgtacacagacaaagaacaggctctatgcacatgca 500

                                                                       
Query: 301 cactgggacatatagttgcaaatggcattcatgtataaccagcattcacagcaagaatct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cactgggacatatagttgcaaatggcattcatgtataaccagcattcacagcaagaatct 560

                                                                       
Query: 361 aaatatcaccaatgttcctacttgataatatctgataatttgtaggtaatgtagttagtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaatatcaccaatgttcctacttgataatatctgataatttgtaggtaatgtagttagtt 620

                                                                       
Query: 421 gtgtgctccctgttcatttgtcttttacagctgatgctcagtagtataggtggtttgggt 480
           |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 621 gtgtgctccctgttcatttgtcttttacagttgatgctcagcagtataggtggtttgggt 680

                                         
Query: 481 ttcctcataatcatgccaatactttttctt 510
           |||||||||||| |||||||||||||||||
Sbjct: 681 ttcctcataatcttgccaatactttttctt 710


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)