Query= MSMg01no062_f06.b1 MSMg01no062_f06.b1 CHROMAT_FILE:
MSMg01no062_f06.b1 PHD_FILE: MSMg01no062_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:48 2005
(699 letters)
>mm_chr8_103506422_103507520
Length = 1099
Score = 1245 bits (644), Expect = 0.0
Identities = 686/700 (98%), Gaps = 2/700 (0%)
Strand = Plus / Plus
Query: 1 ataggtagtgtgaaatgatgaggcacatc-tataagactcatgaccttacatacttaaat 59
||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||
Sbjct: 201 ataggtagtgtgaaatgatgaggcaca-catataagactcatgagcttacatacttaaat 259
Query: 60 agaattaattgtcaatttattataattattggatctatgatagagggtagagaagagaac 119
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agaattaattgtcaatttatcataattattggatctatgatagagggtagagaagagaac 319
Query: 120 actgagtaataaatgagcatggaaaataaaatgtttaaagcagcaccaggtacatagcca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 actgagtaataaatgagcatggaaaataaaatgtttaaagcagcaccaggtacatagcca 379
Query: 180 atttgtaccaagatgagttgtaggtgaacctgtgtatagaaacacaaaatacaaatacaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 380 atttgtaccaagatgagttgtaggtgaacctgtgtatagaaacacaaaatacaaacacaa 439
Query: 240 catactaaagtgcatttgatctattaattaagatagtaggcccagtaattctaagaactt 299
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 catactaaagtacatttgatctattaattaagatagtaggcccagtaattctaagaactt 499
Query: 300 tgtattttattgaaatgaaaagtaaattatcaacgttcaatggtggcgttagtgttggtg 359
|||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 500 tgtattttatagaaaagaaaagtaaattatcaacgttcaatggtggcattagtgttggtg 559
Query: 360 ttcagatgtgtttttatttgttccttagaaagtttaaaatataaaaggaaactatgaact 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttcagatgtgtttttatttgttccttagaaagtttaaaatataaaaggaaactatgaact 619
Query: 420 tttagtttcctgtagtcagtgaacaagaaaaattgactccagggaaaatgaaattttctc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tttagtttcctgtagtcagtgaacaagaaaaattgactccagggaaaatgaaattttctc 679
Query: 480 aagaaaagggtcaaactttgttaaatacatccccttttcttaagttcatttctgaagatg 539
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 680 aagaaaagggtcaaactttgttaaatacatccccttttcttaaattcatttctgaagatg 739
Query: 540 ttgttcagaaccagaacatacatgacaatatgtatttaggtgttttcaccctggagacag 599
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ttgttcggaaccagaacatacatgacaatatgtatttaggtgttttcaccctggagacag 799
Query: 600 attttaaatatcccctttaacatatattgccctagccgggcatggtggctcacgccttta 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 attttaaatatcccctttaacatatattgccctagccgggcatggtggctcacgccttta 859
Query: 660 atcccagcactcaggaggcagaggcaggcggatttctgag 699
||||||||| |||||||||||||| |||| ||||||||||
Sbjct: 860 atcccagcattcaggaggcagaggtaggcagatttctgag 899
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1099
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1089
Effective search space: 750321
Effective search space used: 750321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no062_f06.g1 MSMg01no062_f06.g1 CHROMAT_FILE:
MSMg01no062_f06.g1 PHD_FILE: MSMg01no062_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:48 2005
(563 letters)
>mm_chr8_103626296_103627258
Length = 963
Score = 980 bits (507), Expect = 0.0
Identities = 549/563 (97%), Gaps = 3/563 (0%)
Strand = Plus / Minus
Query: 3 gcctaattgcccatttcctctaaatcgcacttaattaatgcccgagtcttgctattcttc 62
||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||
Sbjct: 578 gcctaattgcccatttcctctaaattgtacttaattaatgcatgagtcttgctattcttt 519
Query: 63 cttagagccaaactttgatttttaataagaaaccatacgagatctatatacttttaaata 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 cttagagccaaactttgatttttaataagaaaccatacgagatctatatacttttaaata 459
Query: 123 caaagggtatagtgctgtaaaaaagcaggagattttagaacaaaatcactttaattctct 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 caaagggtatagtgctgtaaaaaagcaggagattttagaacaaaatcactttaattctct 399
Query: 183 gggatttaactaagtcctgttttgtctttgttatctactttcgtttccatcatcaggaaa 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gggatttaactaagtcctgttttgtctttgttatctactttcgtttccatcatcaggaaa 339
Query: 243 ataagtactctggtattaatgcgactaacactaacaaaaattacttataacagcatgaga 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ataagtactctggtattaatgcgactaacactaacaaaaattacttataacagcatgaga 279
Query: 303 gtcagaaaatttattcaccaactttgctagaaacatccgagtttatcctaggaaaacgtc 362
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 gtcagaaaatagacacaccaactttgctagaaacatccgagtttatcctaggaaaacgtc 219
Query: 363 catgccccacctcacagtatgtgtgtgtgtgtgtgtttt-t-tttgtgtgtgtgtataca 420
||||||||||| |||||||||||||||||||||| |||| | | ||||||||||||||||
Sbjct: 218 catgccccaccccacagtatgtgtgtgtgtgtgt-ttttgtgtgtgtgtgtgtgtataca 160
Query: 421 catgtgcgtacacttgtgactttgcttgcacatgtcagaagtctgtgtacttgtgtatgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 catgtgcgtacacttgtgactttgcttgcacatgtcagaagtctgtgtacttgtgtatgt 100
Query: 481 ttctgtctctttcactttatcaaagcactgacatgtgtacttccccacctggcatttcac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 ttctgtctctttcactttatcaaagcactgacatgtgtacttccccacctggcatttcac 40
Query: 541 atgtatgttggagatatgatatc 563
|||||||||||||||||||||||
Sbjct: 39 atgtatgttggagatatgatatc 17
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space: 527009
Effective search space used: 527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
