BAC Information

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BAC

Clone NameMSMg01-062H15
Chromosome8 (Build37)
Map Location 97,904,980 - 97,905,703
singlet/doubletsinglet
Overlap genenone
Upstream geneHerpud1, EG434339, AI451557, Cpne2, 2310065K24Rik, Rspry1, Arl2bp, Pllp, Ccl22, Cx3cl1, 1700121C10Rik, Ccl17, Ciapin1, LOC664947, Coq9, Polr2c, Dok4, LOC100040942, Ccdc102a, Gpr114, Gpr56, Gpr97, Gm770, Katnb1, Kifc3, BC016201, Map1lc3-ps6, 1700055M20Rik, Zfp319, AA960436, Mmp15
Downstream geneGtl3, Csnk2a2, 4933406B17Rik, Ccdc113, 4931432M23Rik, EG546088, LOC100041040, Gins3, LOC547022, Ndrg4, Setd6, Cnot1, LOC100041953, LOC100041088, BC031853, LOC100041972, Got2, LOC667445
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062H15.T7 (MSMg01no062_h15.b1)MSMg01-062H15.TJ (MSMg01no062_h15.g1)
ACCAG288442AG288443
length1,1681,193
length of high quality
(start - end)		669 (89 - 757)741 (87 - 827)
definitionCHROMAT_FILE: MSMg01no062_h15.b1 PHD_FILE: MSMg01no062_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:06 2005CHROMAT_FILE: MSMg01no062_h15.g1 PHD_FILE: MSMg01no062_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCGGCAGTTNNNNNNGCATTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTGGCATCGTGCAGGCCCTTAAGATGCTAGAGGATCTGA
GATAGTTCTCAATCTTGCTCCAAAGGCAACCAGGAGAAGACTGGCTTCTG
CAGGCAGCCAGGAGGAGACCCTCTCTCCGATTTTGGGTGAAGTTTGAGCA
TAGGACCTCAAAGCCCACCACCCCACAGTGACACACACCCTTGCATGTCC
AGGTGGAGGCATCAAGGCCACACCTACTCCAACACTGCCACACCTCCTAA
TAGTGTGTGGGACTGTGGGTGTGGGGGAAAGAGGGGAGAGAACCCGTGTC
TACCAGAGTTCCGGTGCTCTGGGTGGGTGGACTTGAGAGGACTGCCGCAC
GCTTTCCACTTGGCCCCGTGGGTGTCTGGCTGTGTGAAGCCACTGACCCC
AGCTAGGCGGGTGGTGGACAAGGGGCAGTCCTAGGGACCAGGTTCCCAGC
CTCCGGCATCCCATGCTGAATACCTCGGAGGAGCTGAGAACAAATGAGGG
CCCCAGGTGGCTCGGTCAGCTCCGGGGCCAAAGGGAGGAGAGGGCAGGGA
GATAAGGGGTGCTGGATGGTTTCCACACGGGCGAGAGTCCTTGGTTCGGT
CTGTGGCTGGAGCACAGGAAGACCTTCTGGCAGGAGGTTAGACTCAGCTC
GTTAGGGGAAAGTCTATCCCATTGTTCAAGCACGGCGGGCTTTGATGATC
AGAGACAGTCTATGGTTTTAGAGCTTTATTGTAGAAAGGCAGGGAGAAAG
AAAGACGATATATTGAGAGAGAGAGAGAGACCGGCCATGGCCAGTTGGAG
AGAGGGTAGAAGGTAGAGATATAATTAGCTTTTATCGTTTTATTCTTATT
CCTTCCTATTTCTTTTTCTCTTCTTTTCTCTTTTTTCTTTCTTCTCTTTT
TTTAGTTCTTTTTCTCTTTTTCTTTATCTATATCCTTCTCTATTTCATTT
CTTATTTCTTTTGTCCTTTTCTTGCTTTCCCTTCTTTCTTTTTCCCTTTC
TCCTTCTTTGTTCTTCCCTCTTCTTTCCTTCTTTATTTCTTTTGCTTTTA
TTTTTCTTCTTGTCTCTCTTTCTTTCTTATTTTCTCCCCTTTTCNCTCCT
GTTTCTTTCCCTTTCCTT

CCGTTTTTTTNNNANAAGAAGTGAGGCTGGGGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAGCTGCCCTGTACCCATG
CTAACACTTAGTATTGTCATCATTTGTACTTTACCCACTGGTAGATCAAT
TGCTATGGGCTATGGTATTGTGTTGTTAATTTTTCTTTGTCTGACAGCTA
ATCTTTGAAGTTGGATTGCGATTTTATCCTCTTTCATTTGTTTGTTTTGT
TTTGGAGACAGGATTTCTTTGTGTAGCTCTGGCTGTCCTAGAACTAGCAC
TGTAGATTAGACTGGCCTTGAACTCACAGAGACCTTCCTGCCTCTGCTTC
GGGACTTCTAGGGCTAATGGTTTTTGTTAGTACCCCCTGGCTGTGTTTTC
ATCTTTTCATTGCTTGCTGAGATGTTGTTTCTAAGTAAGGTAATGGCCAA
GTCACCTATGAATGTTTTCCTGGGGGTCTCTTTGTAAAAAGTGTTTTGCA
GCATTCCATCTGCAGATATAAGATTTCTCTTAGCTCAGCATTTTCTCTGG
GAGCTTTGCTGGTCCTTGTTGCAGGGACCCATGGTGAGAAGGAGTGGCCA
TCACTAGGTATTTTCTTACTTTGAAGAATTGCTTGGTGTCTGCTTGATAA
ATCACAACCCCAGGGGAAAAAAGTCTAAATCTGAATTTAATAGCATTACC
TCACCCCCACCCCAAGGAGTTCTTCTGGGTGACTGCCACAGCACCCAAAT
TAGAAATTGCTGAGGTCATTTCAGGCTATTGTGCCTTCTTCAAATAGTAC
TTCCTTGTTTAAAATAAAGAACCAGGACAATGTCAGGTAAGGGCTGTGCT
TGTGTGAGAACTCTGGCCAACAGGGACTCCTTCTCCCAGGAATTGTTTTG
TATAGGAAAAAAAAAAAGCTTACCTAATATTCCAGCATAANGAAAAAGAC
TATTAGAAATGTCCAAATGCTAATTTGAGCATATCCCTCCAATAAAATAA
CTGAAAAATCCTTTTTAATAACAAGACAAGGGGCCTGGAAAAGAACGAAA
ATGGTCCCCCTAATTAAAAAAACCCTTGGATGCTTTTTGTCTCAAGAAAC
CAAGTTTCTATTTCCCCGGGCACAATGATTGGTGTATATAAACATTCTCT
AAATTTTGTGTTTCCAAAAGGGTTCTTCTTTTTCTTCTCTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_h15.g1 MSMg01no062_h15.g1 CHROMAT_FILE:
MSMg01no062_h15.g1 PHD_FILE: MSMg01no062_h15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:07 2005
         (741 letters)



>mm_chr8_97904653_97905794
          Length = 1142

 Score = 1268 bits (656), Expect = 0.0
 Identities = 712/742 (95%), Gaps = 19/742 (2%)
 Strand = Plus / Minus

                                                                        
Query: 1    gccctgtacccatgctaacacttagtattgtcatcatttgtactttacccactggtagat 60
            ||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1051 gccctgtacccgtgccaacacttagtattgtcatcatttgtactttagccactggtagat 992

                                                                        
Query: 61   caattgctatgggctatggtattgtgttgttaatttttctttgtctgacagctaatcttt 120
            ||                  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 991  ca------------------attgtgttgttaatttttctttgtctgacagctaatcttt 950

                                                                        
Query: 121  gaagttggattgcgattttatcctctttcatttgtttgttttgttttggagacaggattt 180
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 949  gaagttggattgcgattttatcctctttcgtttgtttgttttgttttggagacaggattt 890

                                                                        
Query: 181  ctttgtgtagctctggctgtcctagaactagcactgtagattagactggccttgaactca 240
            |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 889  ctttgtgtagctctggctgtcctagaactagctctgtagataagactggccttgaactca 830

                                                                        
Query: 241  cagagaccttcctgcctctgcttcgggacttctagggctaatggtttttgttagtacccc 300
            |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 829  cagagaccttcctgcctctgcttcgggagttctagggctaatggtttttgttactacccc 770

                                                                        
Query: 301  ctggctgtgttttcatcttttcattgcttgctgagatgttgtttctaagtaaggtaatgg 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769  ctggctgtgttttcatcttttcattgcttgctgagatgttgtttctaagtaaggtaatgg 710

                                                                        
Query: 361  ccaagtcacctatgaatgttttcct-gggggtctctttgtaaaaagtgttttgcagcatt 419
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 709  ccaagtcacctatgaatgttttcctggggggtctctttgtaaaaagtgttttgcagcatt 650

                                                                        
Query: 420  ccatctgcagatataagatttctcttagctcagcattttctctgggagctttgctggtcc 479
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 649  ccatctgcagatataagatttctcttagatcagcattttctctgggagctttgctggtcc 590

                                                                        
Query: 480  ttgttgcagggacccatggtgagaaggagtggccatcactaggtattttcttactttgaa 539
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589  ttgttgcagggacccatggtgagaaggagtggccatcactaggtattttcttactttgaa 530

                                                                        
Query: 540  gaattgcttggtgtctgcttgataaatcacaaccccaggggaaaaaagtctaaatctgaa 599
            | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 529  ggattgcttggtgtctgcttgataaatcacagccccaggggaaaaaagtctaaatctgaa 470

                                                                        
Query: 600  tttaatagcattacctcacccccaccccaaggagttcttctgggtgactgccacagcacc 659
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469  tttaatagcattacctcacccccaccccaaggagttcttctgggtgactgccacagcacc 410

                                                                        
Query: 660  caaattagaaattgctgaggtcatttcaggctattgtgccttcttcaaatagtacttcct 719
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409  caaattagaaattgctgaggtcatttcaggctattgtgccttcttcaaatagtacttcct 350

                                  
Query: 720  tgtttaaaataaagaaccagga 741
            ||||||||||||||||||||||
Sbjct: 349  tgtttaaaataaagaaccagga 328


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 741
Length of database: 1142
Length adjustment: 10
Effective length of query: 731
Effective length of database: 1132
Effective search space:   827492
Effective search space used:   827492
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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