BAC Information

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BAC

Clone NameMSMg01-062H23
Chromosome8 (Build37)
Map Location 31,007,904 - 31,008,562
singlet/doubletsinglet
Overlap genenone
Upstream geneUnc5d, LOC100041237
Downstream geneEG628189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062H23.T7 (MSMg01no062_h23.b1)MSMg01-062H23.TJ (MSMg01no062_h23.g1)
ACCAG288458AG288459
length1,1341,135
length of high quality
(start - end)
659 (132 - 790)662 (134 - 795)
definitionCHROMAT_FILE: MSMg01no062_h23.b1 PHD_FILE: MSMg01no062_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:09 2005CHROMAT_FILE: MSMg01no062_h23.g1 PHD_FILE: MSMg01no062_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCATCCTTTNNNTAACCATTGGGCGCTAACGACTCCTAAGGGAGAGGATC
CGCGGAATTCTCCAATTATTGGAACCCTTTATAACCTCTTCCAAAANTTA
CTTGTGATCAGGATGCCTTTTTGGGATCCCCTAAGTGAAAAGCATTCTCT
ACCACTGCCCTAGCTTTCTGTGGCTCAGTAACTTCTGACATAGTAATCAT
TGTCTTGGGTTTACTTGGTTTTTGCATTTGTTCCTTCTCTGCATCTTTGC
AAGGCAAATTTCTTCTTCCTTTTTTTTTAAATACAAAAATCCAATTCTTT
GATTTCAGCCCTCTGAAAATTCAGGATATAATCATAAGATCACTAATTAC
ATTTCCCAATACTTTACATCCAAATAAGTTCACATTCACTACCACCAAGG
TATTGGGACTTGATCATATATTTTCAGTGGATGCAATAAACCTTCAACAA
TTATGTTCATTTAAATTGCAGCTGAATTGAAGTCAATCTACCTGAAAATA
TAGTACAACTTCCTCTTAGTTGAAATAATTTCACACACTGAAGTTTTACT
TATTCTCTTAAGATAGACCAGATCTTAGTAATTTTGTCTTGAATATTTTT
AATTGTTAAATTTTTTAAAGATTTATTTATTTATTTTATGTATATGAGGA
CATTGTAGCTGTCTTCAGACACACCAGAAGCAGGATTCAGATCCCCTTAC
AGATGGTTGTGAGCCACCATGTGGTGGCTGGGAATTGCACTCAGGACATC
TCTTAACCACTGAGTCATCTCTCCAGCCCCCTTAATTGTTAATTTTTAAA
ACACATGTAATGCTGTTCACTGTAATTATTTTTTAAAAGTACAGCTGCAT
TTCTGAAAATTATAGGTTACCTTGATATTTAATTTTAATTTTTCTAAAGG
AAAGAATTTTTGTTATGTTTTTAATTGAACTATCACTGGCCAAAGGTTTA
AAGGATCCCCATATGTATTTTTGAATTAAGTGTTCCAAATTTTATTCCCT
TTTTATCCTCATACCACTGGGGAATTCTATTTGAAATCCATTTATTAAAA
GATATATTAACTATTAAAATTTCCTGGTGGTAATATTTGTGTAAATATAA
AAAAAAAGGGGGACCCTTAAACTTATATAGGTTC
CCCGTCCTTTNNNTTCCGATGTGAGGCTGGXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATATAATGCCCTCATCTGAAGGN
CACTAGGAGAAGATTGCTTTTCAGGACGCCCCAGAAGTTCTCTGAATCTA
CCCTGACAGAGATACACTTTCTCCAACAAGTCCACACCCCTTAATAGGGC
CAATCCCTGGGCCAAGCACATTCAAATCACCATATCTTAAGAATTATAAA
AGCCATCAGGTATGTACAGGCTCAGCTTTTTCAAAATCTACTTTTAGTAA
GTGTTCTTAAATGCTTTAACCTCCCTTCTAGCCCACTACCTACCAAAGGG
AGTGGAAAAGAAAGGTTATTAGGATGTGGGGGAGTGTACCTGTTTAGAAA
TAGTACTTTGGAGCATATCCAATAGATGTTGGCAGGACATATATACCAAC
AGTCCGGTTCAGTAGTGTCATGGAAATCTTCCTTGATGAAAGATGAAAGT
TTCACTTACCTGTGAGTATAAAGAAAAGATTTGGAATGTGGAAAAAAATT
ACGTTGCTCTCCCTAAGTGGCAGTAGAGTATTCTTTCCTAAGGTCCATGA
CTTCACTAGCCCCCGGAAATTGGCTAGGTTTCCGGTTCTAGAAATGACTA
ATTTCTTTTTGAGTGATTCTTAACTCCAATTAGACAGATGCTAGTTGATA
CCAAGGTGCATACCACTTATGGCACAATTATTAATATCTTGACATTCTGA
TAATTGTTGGGATTCAAAGGTATTGCAGCTGTGGATGTCCCCACTGTTGT
CCCTCTACTGTATAAGTTATAATTAGAACTCCGCAGAAGAAATACTTCAC
AAATGAACAATTTACTGTTAAGTTTAATTAATTTTGGTGCAATAAACATG
GAAATTTAGTGCTGTTTAAGCCAGGGCATACTTGATTTTATTTCAACTCA
CAAAATCCCACAGGGCTATGTTGGGAGGGAAAGTTTGTACAAGATTGATT
TTGGAACTTGCCACAAATAAAAAAAAACCTCTCTTTTCTTACCGTTAATT
TTCCTGTATAACCCATAAAAATCGTCTCCCAATGAAGGTGCATGGCTTAT
TCTCCAAAAAAATCCATCTCTCCCCCATAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_h23.b1 MSMg01no062_h23.b1 CHROMAT_FILE:
MSMg01no062_h23.b1 PHD_FILE: MSMg01no062_h23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:09 2005
         (659 letters)



>mm_chr8_31007566_31008624
          Length = 1059

 Score = 1266 bits (655), Expect = 0.0
 Identities = 658/659 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taagtgaaaagcattctctaccactgccctagctttctgtggctcagtaacttctgacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 997 taagtgaaaagcattctctaccactgccctagctttctgtggctcagtaacttctgacat 938

                                                                       
Query: 61  agtaatcattgtcttgggtttacttggtttttgcatttgttccttctctgcatctttgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937 agtaatcattgtcttgggtttacttggtttttgcatttgttccttctctgcatctttgca 878

                                                                       
Query: 121 aggcaaatttcttcttcctttttttttaaatacaaaaatccaattctttgatttcagccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 aggcaaatttcttcttcctttttttttaaatacaaaaatccaattctttgatttcagccc 818

                                                                       
Query: 181 tctgaaaattcaggatataatcataagatcactaattacatttcccaatactttacatcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 tctgaaaattcaggatataatcataagatcactaattacatttcccaatactttacatcc 758

                                                                       
Query: 241 aaataagttcacattcactaccaccaaggtattgggacttgatcatatattttcagtgga 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 757 aaataagttcacattcactaccaccaagggattgggacttgatcatatattttcagtgga 698

                                                                       
Query: 301 tgcaataaaccttcaacaattatgttcatttaaattgcagctgaattgaagtcaatctac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 tgcaataaaccttcaacaattatgttcatttaaattgcagctgaattgaagtcaatctac 638

                                                                       
Query: 361 ctgaaaatatagtacaacttcctcttagttgaaataatttcacacactgaagttttactt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 ctgaaaatatagtacaacttcctcttagttgaaataatttcacacactgaagttttactt 578

                                                                       
Query: 421 attctcttaagatagaccagatcttagtaattttgtcttgaatatttttaattgttaaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 attctcttaagatagaccagatcttagtaattttgtcttgaatatttttaattgttaaat 518

                                                                       
Query: 481 tttttaaagatttatttatttattttatgtatatgaggacattgtagctgtcttcagaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tttttaaagatttatttatttattttatgtatatgaggacattgtagctgtcttcagaca 458

                                                                       
Query: 541 caccagaagcaggattcagatccccttacagatggttgtgagccaccatgtggtggctgg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 caccagaagcaggattcagatccccttacagatggttgtgagccaccatgtggtggctgg 398

                                                                      
Query: 601 gaattgcactcaggacatctcttaaccactgagtcatctctccagcccccttaattgtt 659
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gaattgcactcaggacatctcttaaccactgagtcatctctccagcccccttaattgtt 339


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space:   680801
Effective search space used:   680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)