BAC Information

Click to search

BAC

Clone NameMSMg01-063C06
Chromosome8 (Build37)
Map Location 25,002,352 - 25,002,834
singlet/doubletsinglet
Overlap geneZmat4
Upstream geneMyst3, LOC100042253, Ank1, Nkx6-3, Agpat6, Gins4, Golga7, Sfrp1, LOC100040931
Downstream gene1810011O10Rik, Indol1, Indo, Adam18, Adam3, Adam5, Adam32
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063C06.T7 (MSMg01no063_c06.b1)MSMg01-063C06.TJ (MSMg01no063_c06.g1)
ACCAG288950AG288951
length698707
length of high quality
(start - end)		656 (43 - 698)440 (73 - 512)
definitionCHROMAT_FILE: MSMg01no063_c06.b1 PHD_FILE: MSMg01no063_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:23 2005CHROMAT_FILE: MSMg01no063_c06.g1 PHD_FILE: MSMg01no063_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGTCAAGAGAAAAAAATACCAGGGTGCCTCTGGCTTCCATCTCCTCCT
GAAAGGCCTTTCTCTTTCCCCAGTTCTGTTTTTTAGAATTCAATTGATAC
CATCATCTCCACTCAATTTAGCTTCAGGTGACACAAAAAGTCCCAGAGAG
ATGGTCACTACAAAAACGGCAAAATGAGGCGCTTTATAAAATTGTTTCTC
AGCAAAACAATCATTAACTGCTGAAAAACACGTCTTTGAAAAATACTTTA
GTGTTACTAGAATTATTTTAAAAGCAAGCAGCATTAAGGATGTTTGAAAA
AGTCATGTGGAGACCTACTATTGCATAAGCTTCCTGGTATTTTTTCGTTT
ACTTATGCATATAACACAGGCATTGCCTTATACTCCTCTTGGAAGCCATA
GGCTAGCAAATAAAAACCCTAGCCAGATATATATAGAATATCTCCCCACT
ATATAGAATATCTCCCCACCACATAGAATACATTTCCACTATATAGAAAG
CTTCTCACTATTTAGAATATCTCCCCACTATTTATAAAACTTCTCCACTA
TATTTAATATCTTCCCACTATATAGAATACCTCCCACTATATTGAATATC
TCCCCACTATATAGAATACCTGCCCACTATTTATAANACCTCCCCACT

CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTACACTGATTTCCATAGTGGACATTC
CAATTTGTAATCACACCAATGATGAATGAGTGAGTGTTCCACACCTCCCA
TCCTCTGCACAGCATTTGTTGTTGGTTCTTTTGATTTTCTCTGCCATTCT
GACTAGGTTAAATGGAATCTAAAAGTTGTTTTGATTTAAGTTTTCCTCAT
TGCTAGGGACAATGGGCATTTTTGAGGTCTTTGTTGTCCTTTTCCTTCTT
CATTTGAGAACTCTGTTTGGATCTCAGGTACAGTTATTGAATGGGATATT
TGATGCTTTTTTCCTTTTTGTTGCTTGCTTTTCTCTTCTTTTGAGTTCTT
TACATATTCTTGATATTAATCATTCCTGTCAGATGTGTAGTCTGCAAAAG
ATTCTCTCATATCCACAGACTGCCTCTTCACATGACTGATTGTGTGTGTG
TGTGTGTGTGTGTGCATACCTATATATCTATATATCCTGTAGCTCTATTA
CTTCTTATTTGCCACTTGATCGTACTGACTCGTATCCTGAATTGATTTCT
ATACTAAAAACTCTCTCCTTGCCCTATTTCCTGCTCGCCCACCTGTGTAC
TTAACATTTTCCAGATTTTAACTCCCACAACCTCTTAATTCTTATTTACC
CGCTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_c06.b1 MSMg01no063_c06.b1 CHROMAT_FILE:
MSMg01no063_c06.b1 PHD_FILE: MSMg01no063_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:23 2005
         (656 letters)



>mm_chr8_25002352_25003408
          Length = 1057

 Score =  888 bits (459), Expect = 0.0
 Identities = 477/483 (98%), Gaps = 1/483 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtcaagagaaaaaaataccagggtgcctctggcttccatctcctcctgaaagg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gaattcagtcaagagaaaaaaataccagggtgcctctggcttccatctcctcctgaaagg 424

                                                                       
Query: 65  cctttctctttccc-cagttctgttttttagaattcaattgataccatcatctccactca 123
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 cctttctctttcccaaagttctgttttttagaattcaattgataccatcatctccactca 364

                                                                       
Query: 124 atttagcttcaggtgacacaaaaagtcccagagagatggtcactacaaaaacggcaaaat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 363 atttagcttcaggtgacacaaaaagtcccagagagatggtcactacaaaaatggcaaaat 304

                                                                       
Query: 184 gaggcgctttataaaattgtttctcagcaaaacaatcattaactgctgaaaaacacgtct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 303 gaggcgctttataaaattgtttctcagcaaaacaatcattaactgctgaaaaacatgtct 244

                                                                       
Query: 244 ttgaaaaatactttagtgttactagaattattttaaaagcaagcagcattaaggatgttt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ttgaaaaatactttagtgttactagaattattttaaaagcaagcagcattaaggatgttt 184

                                                                       
Query: 304 gaaaaagtcatgtggagacctactattgcataagcttcctggtattttttcgtttactta 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 183 gaaaaagtcatgtggagacctactattgcataagcttcctggtattttttcatttactta 124

                                                                       
Query: 364 tgcatataacacaggcattgccttatactcctcttggaagccataggctagcaaataaaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 123 tgcatataacacaggcattgccttatactcctcttggaagccataggctggcaaataaaa 64

                                                                       
Query: 424 accctagccagatatatatagaatatctccccactatatagaatatctccccaccacata 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  accctagccagatatatatagaatatctccccactatatagaatatctccccaccacata 4

              
Query: 484 gaa 486
           |||
Sbjct: 3   gaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1057
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1047
Effective search space:   676362
Effective search space used:   676362
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |