BAC Information

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BAC

Clone NameMSMg01-063H08
Chromosome8 (Build37)
Map Location 51,664,180 - 51,664,452
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039919, EG667495, LOC100039954
Downstream geneLOC100039966, LOC667517
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063H08.T7 (MSMg01no063_h08.b1)MSMg01-063H08.TJ (MSMg01no063_h08.g1)
ACCAG289194AG289195
length7681,527
length of high quality
(start - end)
277 (111 - 387)---
definitionCHROMAT_FILE: MSMg01no063_h08.b1 PHD_FILE: MSMg01no063_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:49 2005CHROMAT_FILE: MSMg01no063_h08.g1 PHD_FILE: MSMg01no063_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNTTTCCTTTTTTTTTTTTNCCNNTNTTCTTTCTTTCCCCC
TTTAATTAATGCACCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCGCGGAATTCCTATCTTCCTGATTGTGATAGTTTTATGTT
AGATATTCTACAAGAATTGAGAAGCATTCCTCTACGACTCAAGACTCTCT
AGAGGCCAATATTATATTTCTCACACATTCTGTGTGCAGATTTCCTGGTA
CAAACACAAAACAGTCAAAGCCTAAAACATTTTGAAGAAAAAAATAAATA
TTTTCTAAGCTACCTAAGGATGTGACTTTTTAAAAAAGTTAACTTTGAAA
AATTATCAGCCTGATGCTGAGAAGCTACAAATGTTTACATCATATACAAC
TTGCCAACCTAAAGCAATCTACTCCAATCGACATCCCACACAAGAAATGC
AGCCAGCGTAAACTCTTGGTGCATGACAGGAGGGATAAATAGGGCAGAAA
ATTTGCATTATATGTAGTGAAAACCATTGTATACTGGCTATACAGCTTTT
TCTTTTTTCTGTCCATACTCCGAACTGTTGCCGTTGCATAATCTTCCTGG
CCACATTAATTTAATTGCCTTTGCAACCACATCCTTGATTCTCTCAAGGC
TTTTTCTCCCTTTTCCCTTTAAAGGCCTGGGAATTCTGCTATTTATTCAA
CAATTTTTATAATTCCTCGCGAGCAGCTCTTCGGACTATTTATCTTCTAT
TTCGCCCATTTTATCACG
NCCGTGTTGGGTTNNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNCN
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCNNTN
NNNNNNNNNNNNCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTTNNNNNNNNNNNNNNTNNNNNNN
NCCCNATTNNTNNNNTTNNNNTNTNNNNNNNNNNTTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNCCNNNNNNNNNCCNNTNNNNNNNNCNNNCNNNNN
NNNNNNNNNNNTNNNNTNNNNNCNCTNNNNNCCNNNNNNCCNNNNNNNCC
NNNCNCCCNNNNNNCNNCNNNNNNNNNNCCCCCCANNANNANNNAAAANN
NNNNNNNNNNTTTCCCCTCCTTNCCTTTNNNNNNTNNNNNNTTTNCCNCC
CCCTCTNNNNNNCNNTCCCTNNNNNNNCCCCCCCCCCNNNNNNNTNCCNN
NNNNNNCCNNCCCCCNCCNNCCACCCCCTTCNTTNCCCCTTNCTNNNNNN
TNCNCTNNNNNNNNNCNCNNNNNNNNNNNNCNNNNNCNNNNNCCCCNNCC
CNNNNTCCCCCCCCCCCNACAACANNCNNNNNNTTNNNNCNNACTNATAT
CATATCTCCNNNANACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNATTGGGNNNNCTGGGCTANNNTATGCTCCNNNNCTATGCNTGT
CCTTCGTCGNCTCNTACCTTCTCTCCGCTACTAGNTCTCGCTTGNNTATT
TGCCCCCCCCCNACGNCTCTTCTTCTCCTTTATANTNNTNTAATTNTTTN
TNTNNTGTTCNNNNCCCNNNNCNTCTCTTTTATTATCTTCTATTTCTCTC
ATCTCCTCTCTCAACTACGTACACCCNNATTCCATCTCNCTAAAGAAATA
GNAGAGNNNCGTTAGTGCTGTGTNNATCTGTATCGTTTCGTCGACNTGTA
TGTNNNNNTCTTGTATGGTGCGCGCNATATNNNTTNCTCTGGACTGTTTA
CACNATGCCTGNNNNCTCTCTTAAANNTTCTCGCTCATATTTCTCTTTAG
TGGCGANTTACATAATGGNTGTNNNNNCCTCGTNTNNGAGAGCCGGNNNN
NNNNNANNACNAAAANGCGAAGTTAAANCNGNGCGTGNACTAANATGAAA
TAAACACTTATAACATTCCTCTTCTATGCGCGGTCGTATCTTTTTTGATA
ACCNATTGNGTGNNNNNGGNNNAAAACCCNNNNGGTGGAATTATNTTCGG
NTTTACNNNTTTTCTNNTTNNCTTTCACGGGTAAATCATAACAATATCTC
CTCTTCTTCCATNTCTTTTTTAAACTATTCNAATTTTCTCTACACTACTT
CTAGTCTCTTCTCTCGTTATTCATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_h08.b1 MSMg01no063_h08.b1 CHROMAT_FILE:
MSMg01no063_h08.b1 PHD_FILE: MSMg01no063_h08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:49 2005
         (277 letters)



>mm_chr8_51663976_51664652
          Length = 677

 Score =  499 bits (258), Expect = e-146
 Identities = 270/274 (98%), Gaps = 2/274 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctatc-ttcctgattgtgatagttttatgttagatattctacaagaattgagaa 63
           ||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gaattcctatcatt-gtgattgtgatagttttatgttagatattctacaagaattgagaa 419

                                                                       
Query: 64  gcattcctctacgactcaagactctctagaggccaatattatatttctcacacattctgt 123
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gcattcctctaggactcaagactctctagaggccaatattatatttctcacacattctgt 359

                                                                       
Query: 124 gtgcagatttcctggtacaaacacaaaacagtcaaagcctaaaacattttgaagaaaaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gtgcagatttcctggtacaaacacaaaacagtcaaagcctaaaacattttgaagaaaaaa 299

                                                                       
Query: 184 ataaatattttctaagctacctaaggatgtgactttttaaaaaagttaactttgaaaaat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ataaatattttctaagctacctaaggatgtgactttttaaaaaagttaactttgaaaaat 239

                                             
Query: 244 tatcagcctgatgctgagaagctacaaatgttta 277
           ||||||||||||||||||||||||||||||||||
Sbjct: 238 tatcagcctgatgctgagaagctacaaatgttta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)