BAC Information

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BAC

Clone NameMSMg01-063N04
Chromosome8 (Build37)
Map Location 72,040,136 - 72,040,680
singlet/doubletsinglet
Overlap geneEG665578
Upstream gene4732435N03Rik, Ints10, Lpl, LOC100041138, Slc18a1, Atp6v1b2, Lzts1, EG665540, D10627, LOC665553, D130040H23Rik, LOC665561, LOC670593
Downstream geneLOC622336, LOC100041482, LOC673968, AI449175, EG636741, 1200003I07Rik, D330038O06Rik, Atp13a1, Gmip, Edg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6, Gatad2a, LOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063N04.T7 (MSMg01no063_n04.b1)MSMg01-063N04.TJ (MSMg01no063_n04.g1)
ACCAG289463AG289464
length678676
length of high quality
(start - end)		545 (43 - 587)574 (75 - 648)
definitionCHROMAT_FILE: MSMg01no063_n04.b1 PHD_FILE: MSMg01no063_n04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:20 2005CHROMAT_FILE: MSMg01no063_n04.g1 PHD_FILE: MSMg01no063_n04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:20 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGAA
TCACTTTTCCCAATTGACTATGATTGCTGACTGCTCTCCTCCCACCTTTT
CTCAAGAGAAAATATCAGGAATACTTAGCTCTTAATTAAAACACAAAGAA
AGGTGCACGCGCACGCAAACACACAAACACACACACACACACACACTAAA
AAGAATTAAAGACAAGATCGGGCATGCTCAGGGTGGTTTGGCTGTAGACA
CTTATGGAAGTCTAAAAGGAAGGATTCCAGGCCTGAAGGAGATAGGAACT
CCAGAGAATGACCAACCACCAGAATCAAATAACATGAACCCTCAGGGCAC
TCAGAGATGGAACAATGAAACAAAGAACAAACATGGGTTGGACGGATATC
TCCGAGCACCTATGTAGCAGAGGGGCAGCTAGGTCTTCACATGGGTCCCA
ATCAACTGGAATGGGGGTATCAAAAAAAGCTGTTCATCCTACCTCAGTTT
TATTCTTCTAGCTGAGCTACTTTTTCTGTCCTCAGAGAGAGACGAAGTGC
CAGGGTTTGGACATACAGGGAATCCCAAACTGCTCAGAGGTGAAGTGGAG
GAGGGGCAGGCAGAGACTGTGGGACTGGGTGACCAGGAGGGGCGCACTGA
GCTAGATGTAAACATAACAAAAATAATA

CTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAATTCAGGTCATAAAGACAGGAGAG
GACACATTTTGTCCTTTCTTTTTATGTCTTTCCATTTTGTAGAGAATGAT
GATGTGAGGTAGCAAAGAGCAGAAGATAAAAGCATAACACTAAGCAGGTC
CCCATCAAAGATTTCTAGATACTCTGGGCCTTTTACTCATCATGCAGAAA
GGAAGCAGAGGTTGCTAAATATCAGATAGTGTCCTTAGTGATGAAGTTGG
TCTGAATACAGAAACATTTTGGGGACTATAAATCAAGATTCTGACATTAG
CAGACAGGTGATAAAATGAATAACATCAGTGAAACTTTAAATCAAAAGTA
ACATTGCCAATTTTCCTTATAGGTGCGAGGAAATAAACCACCTATTTTCC
GTACCTTTCCTCGGAAGCATAGAATTCATGTGCTTGAGGCTCCTGGTGAC
ATTGAGCCAACTCATTCCACCTGTGCTGCTGACAGCAGGGCTCCTGCTGA
TGCTGAGCCAAATTCTTCCACCTGTGCTGCTGTCAATGGGGCTCCTGCCG
GTGTTGAGCCAACTACTTCTTCCCAGTGTGCTCCTGACTGTGAGGATCCT
GCAGTCCTTGAGCCAACTCATTCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_n04.b1 MSMg01no063_n04.b1 CHROMAT_FILE:
MSMg01no063_n04.b1 PHD_FILE: MSMg01no063_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:20 2005
         (545 letters)



>mm_chr8_72039928_72040873
          Length = 946

 Score =  909 bits (470), Expect = 0.0
 Identities = 524/546 (95%), Gaps = 10/546 (1%)
 Strand = Plus / Plus

                                                                       
Query: 9   tcacttttc-ccaattgactatgattgctgactgctctcctcccaccttttctcaagaga 67
           |||||||||  ||||||||||||||||||||||||||  |||||||||||||||||||| 
Sbjct: 209 tcacttttcagcaattgactatgattgctgactgctcagctcccaccttttctcaagagg 268

                                                                       
Query: 68  aaatatcaggaatacttagctcttaattaaaacacaaagaaaggtgcacgcgcacgcaa- 126
           |||||| ||||||||||||||||||||||||||||||| ||| |||||| | ||||||| 
Sbjct: 269 aaatatgaggaatacttagctcttaattaaaacacaaacaaa-gtgcacacacacgcaaa 327

                                                                       
Query: 127 -----acacacaaacac--acacacacacacacactaaaaagaattaaagacaagatcgg 179
                ||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 cacacacacacaaacacaaacacacacacacacactaaaaagaattaaagacaagatcgg 387

                                                                       
Query: 180 gcatgctcagggtggtttggctgtagacacttatggaagtctaaaaggaaggattccagg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gcatgctcagggtggtttggctgtagacacttatggaagtctaaaaggaaggattccagg 447

                                                                       
Query: 240 cctgaaggagataggaactccagagaatgaccaaccaccagaatcaaataacatgaaccc 299
           ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 448 cctgaaggagataggaactccagaggatgaccaactaccagaatcaaataacatgaaccc 507

                                                                       
Query: 300 tcagggcactcagagatggaacaatgaaacaaagaacaaacatgggttggacggatatct 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tcagggcactcagagatggaacaatgaaacaaagaacaaacatgggttggacggatatct 567

                                                                       
Query: 360 ccgagcacctatgtagcagaggggcagctaggtcttcacatgggtcccaatcaactggaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ccgagcacctatgtagcagaggggcagctaggtcttcacatgggtcccaatcaactggaa 627

                                                                       
Query: 420 tgggggtatcaaaaaaagctgttcatcctacctcagttttattcttctagctgagctact 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tgggggtatcaaaaaaagctgttcatcctacctcagttttattcttctagctgagctact 687

                                                                       
Query: 480 ttttctgtcctcagagagagacgaagtgccagggtttggacatacagggaatcccaaact 539
           |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 688 ttttctgtcctcagagagagacgaagtgccagggtttggacatacatggagtcccaaact 747

                 
Query: 540 gctcag 545
           ||||||
Sbjct: 748 gctcag 753


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 946
Length adjustment: 10
Effective length of query: 535
Effective length of database: 936
Effective search space:   500760
Effective search space used:   500760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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