BAC Information

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BAC

Clone NameMSMg01-064A07
Chromosome8 (Build37)
Map Location 32,483,980 - 32,631,184
singlet/doubletdoublet
Overlap gene7420700N18Rik, LOC100041329
Upstream geneLOC547008, Dusp26, Rnf122, BC019943, Rbm13, Fut10, LOC666330, LOC666568
Downstream geneEG330731, LOC100041340, Nrg1, 2010007E15Rik, EG666589, EG546052
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064A07.T7 (MSMg01no064_a07.b1)MSMg01-064A07.TJ (MSMg01no064_a07.g1)
ACCAG289606AG289607
length1,2931,228
length of high quality
(start - end)
624 (42 - 665)382 (71 - 452)
definitionCHROMAT_FILE: MSMg01no064_a07.b1 PHD_FILE: MSMg01no064_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:37 2005CHROMAT_FILE: MSMg01no064_a07.g1 PHD_FILE: MSMg01no064_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,630,810 - 32,631,184)(32,483,980 - 32,484,361)
sequence
CTTCCTTTTNNNTTCATTGGGCGCTAAGACTCCANAGGGAGAGGATCCGC
GGAATTCCACAATCTGGGAAGCACCCTTTGAAACTTTTTTTTTTTTTAAT
TCACTTTACATCCTGCCCTCTGCCCACCTCTGGCCAGCCCCTTCCACAAT
CCTTCCACCATCCCCTTCCCCTCTAAGTGAATACTGCACCCACCCCCCAC
CCCCGTAACCCCCTACCCCGGGCACTTTGAGTCTCTGTAGGGCTAGACAC
AATCTCTCTCACTGTACCTAGACAAGACAGCCTAGCTAGTAGAACATATC
CCACCCGCCGACAGGCAACAGCTTTTGGGAGAGCCCCTGCTCCAGTTGCT
ACACATGTGCAAGAAGGCCTAGGTCCAGCCTATGTATCCTCTCTGGTTAG
TAGTTCATTCCCTGGGAACCCTAAAGGTCTAGGTTAGTTGACTGTTAGTC
TTCCTGTGAGTACCCCTTGGGGCCCACAGTCCTTTCTACTTGAAACCAAA
ACTTTAACAGAGTAAAACTTTCCTAATTCTCTTATATAGCCTGACTTGCT
TGAGTTTTTCTTTACTTTGGATGAGATTAAGATATGTTATGGCTTGAGGT
TTTGGGTTTTTTTCTTCTTCTTTCCCAAGACTTACTGGCCATTTGAAAGT
AATTTTTTTTTCTTTATCAGACACATATTTAGAAAAATCATTAAATAATT
ACTAATGTAAAGTCTATTTCACACTTGTGAAGCGATTCCCTTTGAAATGC
CATTGTGCCTGTAAATTCATTTTCAAATCTGTGATAACCATATTCTTAAA
AGAATGACTATGTGAAGGGCTCAACTAATTATCCGTCTTTCTCTACAATA
TATTTATAGGAATAATATCATCTCTTTCATTAACAGATGGTTTGACTTAA
CTTGGCAAAATTCCCCCTATTAATACTTATATTTACCTTCACCGATAGCC
TGTATCCTCTTTCATTCCTTTGGTCTTTTTTTAAAAACTCTACCCCATTT
CTTTTGTTGTAAAAATTGTATATCCTTTATCCCCCTCTAACGTGCTGCTG
TTGGAATCCTTTACCTACTGTACTTTGTAGCCCCATTCAAAATGATTTTC
TATCAAATTTATATTTTTTCTACCCTCATAACTTATATCTCATTTTTTCT
CTCCTATATTTTCACTTCCATCATCTATAATATTCTTTATCTTAAGCTTC
ACATATACTCTTAATATCTTTTATATATCTTCCCTACCTTTATCTACTCT
TTTATACAACTCTTTTCTCTCCTCTCCTCTCACTCTCCATCTG
NNNGGAGATGTGAGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCGAAGGAGAAGCGGCACAGATACTGTTTGG
ATCTGCCATTGAAATGAGACAGCACAAACGGTCACTTTGTTTTGTTTTCT
TGCAACAGTGAGTTGCCTGGTACTGTTTCACATCCGTATAGGACATTGTT
AGGCTCACTCAGAGATTCTTCCCAGAGGCCAGTGGGCTATGGTGTGGGAA
AAGACTCCTGGAGAGAAATGACATTTTAGAAAACTCCACGTCAAGAAATT
GTGTGTTTCTGACTGAGTAGTTTCTAGAATGTAGACATAGTTACAACTAC
TTTGGATATTTTATGCCATTTAATCTTCATAACACCATATGAGGTAGAAA
TAAGTTTATCTATCTGTCTGTCTATCTATCTATCTATCTATCTATCTATC
TATTTTTTTCTCCCCCCCCCTATCTATCTATCTATCTATCAAAAAATCTA
TCTCAATTGTATAGAAGTTGACCTTTCCCAAAGCTATAACTACCAAGCAA
CAGGGCTGGTATCCAAATTCTGAGTTTCCTTAGGGGAAGGAGGGTTAAAT
ATATTTATGAAACCATTGAACTTGAACCATTTTGTTGAATTTGGAAAGTA
ATGGGCCATCGTGAATTTCTTTTTTTTTTTTAAAGATTTATTTTATGTGT
GTTTATTTGTCTGCATGTCTGTGCACTGTGAGCTCACAGAGGCCAGGAAA
AGGCATTGGATTCATTTCCTGAGACTGAATTACAGATGGTCATGAGCTGC
CCTGTTGTTGCTGGGGACTGAACCCAATTCCTGTGCAAGAGCAGCCAGTG
CTCTCACCATGAAGCGAGCCATCCCTTCTGTCTCCCTCTCTCTCTCTTTT
TCTTTTGCAACCGCGTTAATTAGTACAAAATAATAGGTTTTATTATGATA
TTTCCCCCCCCCCCTATATGCCCAATTAACCCCCTGGTTAAATTTAACTT
AAATTTAAAAAGTTGGCCAAAATATAATCATTAAAAACTTCCAGGTCCTC
CTGGTATTATTTTAATAATTCCACAACCCTCCCAAAAAAAATATTTTTTA
TCTTTGTCCCCCCCAATTTTTGGTAAGGTCTTCTCCCCCACCCTACAATA
AGGTGTTGGTGTGGTCCCTTCCTTCCTTCCTATTCTATTAAAATAGAATT
ATTTTTTGTCTCTTTCTAAGAAACAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_a07.b1 MSMg01no064_a07.b1 CHROMAT_FILE:
MSMg01no064_a07.b1 PHD_FILE: MSMg01no064_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:37 2005
         (624 letters)



>mm_chr8_32630161_32631184
          Length = 1024

 Score =  702 bits (363), Expect = 0.0
 Identities = 372/375 (99%)
 Strand = Plus / Minus

                                                                        
Query: 250  agaacatatcccacccgccgacaggcaacagcttttgggagagcccctgctccagttgct 309
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1024 agaacatatcccacccgccgacaggcaacagcttttgggagagcccctgctccagttgct 965

                                                                        
Query: 310  acacatgtgcaagaaggcctaggtccagcctatgtatcctctctggttagtagttcattc 369
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 964  acacatgtgcaagaaggcctaggtccagcctatgtatcctctctggttagtagttcagtc 905

                                                                        
Query: 370  cctgggaaccctaaaggtctaggttagttgactgttagtcttcctgtgagtaccccttgg 429
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904  cctgggaaccctaaaggtctaggttagttgactgttagtcttcctgtgagtaccccttgg 845

                                                                        
Query: 430  ggcccacagtcctttctacttgaaaccaaaactttaacagagtaaaactttcctaattct 489
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844  ggcccacagtcctttctacttgaaaccaaaactttaacagagtaaaactttcctaattct 785

                                                                        
Query: 490  cttatatagcctgacttgcttgagtttttctttactttggatgagattaagatatgttat 549
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 784  cttatatagcctgacttgtttgagtttttctttactttggatgagattaagatatgttat 725

                                                                        
Query: 550  ggcttgaggttttgggtttttttcttcttctttcccaagacttactggccatttgaaagt 609
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724  ggcttgaggttttggttttttttcttcttctttcccaagacttactggccatttgaaagt 665

                           
Query: 610  aatttttttttcttt 624
            |||||||||||||||
Sbjct: 664  aatttttttttcttt 650


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space:   622596
Effective search space used:   622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no064_a07.g1 MSMg01no064_a07.g1 CHROMAT_FILE:
MSMg01no064_a07.g1 PHD_FILE: MSMg01no064_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:37 2005
         (382 letters)



>mm_chr8_32483780_32484561
          Length = 782

 Score =  677 bits (350), Expect = 0.0
 Identities = 374/382 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgaaggagaagcggcacagatactgtttggatctgccattgaaatgagacagcacaaacg 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cgaaggagaagtggcacagatactgtttggatctgccattgaaatgagacagcacaaacg 260

                                                                       
Query: 61  gtcactttgttttgttttcttgcaacagtgagttgcctggtactgtttcacatccgtata 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcactttgttttgttttgttgcaacagtgagttgcctggtactgtttcacatccgtata 320

                                                                       
Query: 121 ggacattgttaggctcactcagagattcttcccagaggccagtgggctatggtgtgggaa 180
           |||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 321 ggacgttgttaggctcactcagagattcttcccagagaccagtgggttatggtgtgggaa 380

                                                                       
Query: 181 aagactcctggagagaaatgacattttagaaaactccacgtcaagaaattgtgtgtttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagactcctggagagaaatgacattttagaaaactccacgtcaagaaattgtgtgtttct 440

                                                                       
Query: 241 gactgagtagtttctagaatgtagacatagttacaactactttggatattttatgccatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gactgagtagtttctagaatgtagacatagttacaactactttggatattttatgccatt 500

                                                                       
Query: 301 taatcttcataacaccatatgaggtagaaataagtttatctatctgtctgtctatctatc 360
           ||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||
Sbjct: 501 taatcttcataacaccatatgaggtagaaataaatttatctatctatctatctatctatc 560

                                 
Query: 361 tatctatctatctatctatcta 382
           ||||||||||||||||||||||
Sbjct: 561 tatctatctatctatctatcta 582


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)