BAC Information

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BAC

Clone NameMSMg01-064H02
Chromosome8 (Build37)
Map Location 40,256,878 - 40,257,191
singlet/doubletsinglet
Overlap geneLOC100038974
Upstream geneTusc3
Downstream geneLOC632066, EG621335, LOC434304, Msr1, EG621431, LOC100039072, LOC666959, EG632166
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064H02.T7 (MSMg01no064_h02.b1)MSMg01-064H02.TJ (MSMg01no064_h02.g1)
ACCAG289913AG289914
length718733
length of high quality
(start - end)
320 (45 - 364)52 (173 - 224)
definitionCHROMAT_FILE: MSMg01no064_h02.b1 PHD_FILE: MSMg01no064_h02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:23 2005CHROMAT_FILE: MSMg01no064_h02.g1 PHD_FILE: MSMg01no064_h02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGCAAATCTCCTAAAGCCAATTGATCGAACAAATGATTTAATGTA
AAGACCTCATACAAAACATGGTTTTCCTGAGAGTTTCACTTTTAACACGT
AATTTCTAGAATTTTAAAACTATTTTAATAGTTTTATTACTTGTAGTGAT
CTATTTCTATAACTTGTAGCCATCCACTTTGTTAGTTGCTTTGTTATAGA
AGGCCAAGGAAACAAAATGAGCAATCAGCTTTATTAAATACACTGTACAA
ATCATGGTAATAATTATTTATTAAGAAACTTTTAATCTAGATTATAATAG
ATGCCACTTTGTATCTCCCACCACTACCCCAATTAACTGTTTAGGAAGAT
GTAGGGAAATCAGATTCTTCATATACTGTTAGTGAGAATGCCAAGTTGGT
CTACTATAGAAGTAACTCAGTGAGACTTCAACCATATGCACATATACTTA
CCAAATGACCTAGCAACCAAATCTATTACTTGATTTTTGTTAAAAGAATT
AAAAATCATTTAGGCAATACACACACACACACACACACATATCAAAGTAT
AGCACTCACAAATACTAGCTACATAGAATAAGCCAAATATCCATTTATTG
TTGGGACAACTATAAGACTAAGCCATAATATTGGGGTGAATTACTATACA
ATTCATAGCACGAATGAA
CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATGGTTAAATAAGGAAGTTAAACCTG
AATTAAAGGAATTAATAACTTTAATCCTGGAAACCTGGTGAACTTAATAA
TTTAAAAAGGGGCTTGAAATACCTTTTTTTTGCTTTGCTAAAAAATTTTT
AAATAAGGAATTTCCTAATTTACCTTTCCAAAGGTATCCCCAAAGTCCCC
AAAACCCCCCCTCCCCTAACTAACACTCCCACTTCCTGGCCCCGGGGGTC
CCCCGGACCGGGGCAAAAAAAGGTTGCAAGAACCAGGGGCCCCCCCCCCC
CAAGAAGGCCCAATAATTTATTGGCCCCCCCCGCCGCCAAAAACCAAAAC
TCCGGGGTACTGGTTAAGTCCAAAAGGTGGACCAACCAAAAGGTTACCGA
ACCCCTTAACTCCCTGGGTGCTTTCCCCAACTCCCCCAATGGCGGCCCCG
GGGTCCCTCCGAAAACTGAACAAAAGGCAAGGGGAGTCCGGCCCCTTTAA
ACCCTTGGAAAAATTCCAAACTAACTAAACCGCTCCTTTTGAAAAACAAA
AGCGCCGCCACTGGACCAAAGGACCCCAAAAAGGAATAAGAATATTGGAA
GAAGTGGTGAAAAACCTAAAAAAATAACTTAATTGAAAAAAAAAAACCAC
CCCAAAAAGGCGTTTGGACCCCCAAAAAGAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_h02.b1 MSMg01no064_h02.b1 CHROMAT_FILE:
MSMg01no064_h02.b1 PHD_FILE: MSMg01no064_h02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:23 2005
         (320 letters)



>mm_chr8_40256675_40257394
          Length = 720

 Score =  607 bits (314), Expect = e-178
 Identities = 314/314 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccagcaaatctcctaaagccaattgatcgaacaaatgatttaatgtaaagacct 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccagcaaatctcctaaagccaattgatcgaacaaatgatttaatgtaaagacct 263

                                                                       
Query: 64  catacaaaacatggttttcctgagagtttcacttttaacacgtaatttctagaattttaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 catacaaaacatggttttcctgagagtttcacttttaacacgtaatttctagaattttaa 323

                                                                       
Query: 124 aactattttaatagttttattacttgtagtgatctatttctataacttgtagccatccac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aactattttaatagttttattacttgtagtgatctatttctataacttgtagccatccac 383

                                                                       
Query: 184 tttgttagttgctttgttatagaaggccaaggaaacaaaatgagcaatcagctttattaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tttgttagttgctttgttatagaaggccaaggaaacaaaatgagcaatcagctttattaa 443

                                                                       
Query: 244 atacactgtacaaatcatggtaataattatttattaagaaacttttaatctagattataa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atacactgtacaaatcatggtaataattatttattaagaaacttttaatctagattataa 503

                         
Query: 304 tagatgccactttg 317
           ||||||||||||||
Sbjct: 504 tagatgccactttg 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)