BAC Information

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BAC

Clone NameMSMg01-064I01
Chromosome8 (Build37)
Map Location 68,403,445 - 68,403,764
singlet/doubletsinglet
Overlap geneMarch1
Upstream geneLOC619647, 3110005G23Rik, Trim75, Trim60, LOC665388, LOC665396, LOC100040949, LOC665405, Vaultrc-ps1, LOC100040967, LOC100040986
Downstream gene1810029B16Rik, Tktl2, Npy5r, Npy1r, BC053440
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064I01.T7 (MSMg01no064_i01.b1)MSMg01-064I01.TJ (MSMg01no064_i01.g1)
ACCAG289958AG289959
length1,2271,192
length of high quality
(start - end)
---322 (77 - 398)
definitionCHROMAT_FILE: MSMg01no064_i01.b1 PHD_FILE: MSMg01no064_i01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:28 2005CHROMAT_FILE: MSMg01no064_i01.g1 PHD_FILE: MSMg01no064_i01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAGCATNNGGNGATACATTGGGCGCTATAGACTACTAAGGGAGAGGATCC
GCGGAATTCTTGGNAGAGNNAGNNGCCGTTGAGGGGGAGAGNNNNNAGAG
ANNNGAGGANNNNNNGCCTTTAAAAGGGNNNNNGAGNGNAGGNNNNANNN
NNGAGNNNANAGGGANNGGGANGNNGGNAAANNNNAANNACCAGNAAAAG
NNNANGAAGNAGNNGGNAAANNANNANNNNNAANNAANGGGNNNGGNANA
GANNNNNAAANANANNAAANANGAAGAGGGNNNNNNANNGNNNGNNNNNA
AGANNGANGAAAANNNNNGNAANAANAGGGGGAAGGGTANAGGGAAGAAG
GNGGNGGGNGAAGGNANNNGGANAAGGGANNNNNANANGNAGANAGGGNA
ANNNAGTATTTTTTTTTNGNGNGNNNGNANNNNGGNAAANGANNNNAAAA
AAAGACCCCCANAGNCAGCCGCGCCCGGGGGNGCNCGCCNNNAANCCCAG
AACAAGGGAGGCAGAGGCAGGGGGANNNCGGAGNNCGAGGCCAGCCGGGN
CNACAGAGGGAGNNCCAGGACAGNCAGGGCNACACAGGAAACCCGGGCNC
AAAAAANCANAAAAAAAGAAAAAAAAAAAAAAAAAAACCNAAAAAGAAGG
CCAAAGNCAAGGGNAAGAAACACAAACNNAANNNNNNNCAAGGCAAANGN
CCGAGAGCAAACNNCNAAAAGGCCNCCCGGAAAGGGAAAAAANNNCNNNN
NCGNGGAGGCNAAGGGGAANNCNAAAAGGAACAAAGGGNATTTAAAACCG
AAAAGAAAGGGGAAAAAGAGGGCCAAAAAAAAGGAAACCGCCCNCGGGGA
ANAACGGAGAAAGAAANAGGGGAAAACAGGGGGAAAGGGGAAAANAGGGG
CNAAGGGGGGAACGAAANAAANCAGGGGAAAACCCAAACAAGGGNGCGGG
GAAACAAAGGAGGAAAAAAACCAAACGANNNCNCCAAAAAGAAGGGGGAA
AAAAAAAAAAAAGGGANANGGGGCCAGGGGAAANAAAAAAACNAAAAAAA
AAAAGGGAGGGGAGGGNAAAAAAAAAAGGGGGCAAAGGGGGAAAAGAGGG
GCAAGAAANCGGGGGGGGGGGAGAAAACAAAAANANCGGGGGAANACGGG
GGGGGAAAGGGGCGCCAAAAAAAAAGGGGAAAACCNCNGCAAAAGNACCG
GGGGGAAAAGAAAAGAGGAAGAGAAGC
NNAAAAGATGGAGCCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCCTCTTATCAAATGTGATGATGAACGTTAATTCATG
AATGTAAATTCTAAACATTAAAATAAAATAAATCACTTTTTGCTAAAGAC
AGTATTTAGCTACCTTAATACAGCCTCAGCCCATTGTTTCTGCAAATAGA
GATTTGTTTGTTCACTGTTATAAAGGATTAATAATTATAAGCATGTTTGC
CCAGGACGAATCAGCATTCTTGACAGTATCATCTTTTTGAACTCAAGCAT
CAGCTAATAAGGGTTTTATCGAGAATTTTTAAACAACTGGCTAATAAATA
CAAAGAAACTGTAATAAAGAAATGTTCTTTATTACTGAAATCAGATTTTT
TTTTTGCAAANCAAAACNGGGAACATATAAANCCAANAAAGAACNNATTT
TTATCCTCCNGCCGCCCCNGGNAAANANCCCCCCCAAACCCAAGGAAGGG
GGGGGACNCCNNNNNGANNNNNNCNGANGGNCNNNCCNNNNNGGGNGNCC
CCGGCNAAGNCNCCGNNGGNCNGCNGAANNCNNGCNCNCNCGACNCNNNN
GGAGNACANNCCCGGAAANAGAAAANNAAAANAAANAAGNAAAGGGGAAA
GNANAAGNNAAAAGGAACAGAAAAAGACANGGNAAAAGNANCACGACCCN
AACAAAGAGCAAANNNNACAANNAAAAANAAAAANAGGCCAAGGNNNGAA
GGCAANANACCANCACCACNCCCCCGGAACGGGAAGCAGAAGAANCCGGN
NAGAAACCAACGGAAGGCCAAACCGGGGGGGGNNCACAGGAACAAAAAGG
GNCCAAAAACAAAAAACAANCCCCNGGAAAAAAAAAAAGGNCCCCAAAAA
CCAANGGGNCCCCCACGGGGAACAAAGGGAAAAGGCGGGNAAAGGGGGAA
AGNNNAACCCAAACAAAAAAAAAGGGGGGGAAAAAAACAAGCCCGGGNCC
CCGGAACANGGAAAAAAAGGAAGGGCAAAACCCGGCCGGGAANNNAAAAC
CCGGAANGGGAAAAAAAGAAACCCAAACNNNCCAAAAAAAAAAAAGAGAG
CAGGGAAAAAAGGGGGGGGGAAAAAAGGGAGAAAAAAAGGGAGGGGGACA
AAGGGAACCACCAACAACAGGAGGGGGCAAAAACACAAAACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_i01.g1 MSMg01no064_i01.g1 CHROMAT_FILE:
MSMg01no064_i01.g1 PHD_FILE: MSMg01no064_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:28 2005
         (322 letters)



>mm_chr8_68403245_68403966
          Length = 722

 Score =  557 bits (288), Expect = e-163
 Identities = 312/320 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgatgatgaacgttaattcatgaatgtaaattctaaacattaaaataaaataaatcac 60
           |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 520 tgtgatgatgaatgttaattcatgaatgtaaaatctaaacattaaaataaaataaatcac 461

                                                                       
Query: 61  tttttgctaaagacagtatttagctaccttaatacagcctcagcccattgtttctgcaaa 120
           |||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||
Sbjct: 460 tttttgctaaagacagtatttagctaccttaatacagcctcagaggattgtttctgcaaa 401

                                                                       
Query: 121 tagagatttgtttgttcactgttataaaggattaataattataagcatgtttgcccagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tagagatttgtttgttcactgttataaaggattaataattataagcatgtttgcccagga 341

                                                                       
Query: 181 cgaatcagcattcttgacagtatcatctttttgaactcaagcatcagctaataagggttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 cgaatcagcattcttgacagtatcatctttttgaactcaagcatcagctaataagggttt 281

                                                                       
Query: 241 tatcgagaatttttaaacaactggctaataaatacaaagaaactgtaataaagaaatgtt 300
           ||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tatcgagaatcactaaacaactggctaataaatacaaagaaactgtaataaagaaatgtt 221

                               
Query: 301 ctttattactgaaatcagat 320
           ||||||||||||||||||||
Sbjct: 220 ctttattactgaaatcagat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)