BAC Information

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BAC

Clone NameMSMg01-064J10
Chromosome8 (Build37)
Map Location 99,951,551 - 99,951,855
singlet/doubletsinglet
Overlap geneLOC546090
Upstream geneLOC333331
Downstream geneLOC636859, EG384885, LOC100041173, EG636915
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064J10.T7 (MSMg01no064_j10.b1)MSMg01-064J10.TJ (MSMg01no064_j10.g1)
ACCAG290018AG290019
length719742
length of high quality
(start - end)
309 (47 - 355)---
definitionCHROMAT_FILE: MSMg01no064_j10.b1 PHD_FILE: MSMg01no064_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:38 2005CHROMAT_FILE: MSMg01no064_j10.g1 PHD_FILE: MSMg01no064_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:38 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACCATTCTGCAGGAGCCGGGGCTGTGTGCTGTGTGGAGATCAGA
GCCAAGCAATTCACTGCCTTGGAGTTGTAATTCCCCTGCCCACGCCAAAG
CCTGGTTTCTGCACCATGTCTCCACGGAAAGGGCCTCTCATCCCACCACT
CGGCCCACCACGGGGGGCCTCCAGGTCCCCGAAGGCGGTTATCCCTGCGG
TCGCCTTCTCTGGCAGCTCGAGTCTTCTTCTCTTCCACATTCAGGCGGAC
CGCGCCTCGGAACATGATGTGCCTATTATTAAGGACCTTCTGAACAGGTT
CAGAATTTTTTTTCTCCCCCCACCCCACATTGGGTAACTTCCCACCACTG
TTGATGCGCAGCTCCACCACATTGCCAAAATTTTGCAAAAAAATCCTTCA
GTTCCGACTTGTCAACCTCATGTGGCACGTTTCCAGTGAAGAGCTGGTGA
CTGTCAGGGTGCCTCACCATCCTTCGAGTTCACATCTCATGGTTCACCAG
CCTCACGGATTGCTCGGGGTCCTCTCTGAGGAGGGACATTGATTCGCTGC
TCTCGAACTCTCTGACCTCTCCGAGTCCTTTGTGGTGAGAACTGACCATC
TCCCCTACATTCCTCACGGGGCTGCGACCCCGCTACTTTGACCACATGTA
CCGTTTGCCCCCGTTCCCG
ACATGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCACTTAATAAAATCAGGGAAC
CAATAACTTATGGAAATGGATTAATCCCTTTAAAAATTGACTAATTAAAG
GATTCAATTTATATAAAATGGATTTAAAAACCCCATTTAAGTGGAAAAAG
AAAGGTTAAGGGTTCCTTTAAAAAGAAAACTTTAAAAACCAATAAAAAGG
GGAACTGGTTGGAAAGGAAAGTTAATAGGAATAAAAAAAGGCCTTAAGTT
AAAACACCCAAAATTTTACAATTCAATTTTGTTAAAAAGAAAAAGGCAAA
AATTTAAAATAAAAATTAATTATTGCCCCCCCCCCCCCCCAATTATTTTC
TGAAAAAGTAATAAAATTAACCCCCCCCGGAAAAAAAAAAATTGACAAGT
TTACGGAAAAAGGCTCCTAAGGGCTTTTAACCCGGCAAAGGAACCTTCCA
AATTGGCGGCCGGCCAAACCCTTAAAATCCCTCGTTCCCATAAAGCTGGC
TTCCCCACCGGCTCAAACCGGGCCTAAAACCTAAAAAAGGTCTTTTTGGA
CGGAAAGTCCCCCCACATGGACCCTATGCCCAGAACAAAAGGGTTCCTTC
CTTTCTCCCAATTTCCCAAACTTCCCCCCAATTAACCCCTGGTTATTCCT
TACCGGCCCCTCCCTTACAAACCCCAACGGCCTTATACAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_j10.b1 MSMg01no064_j10.b1 CHROMAT_FILE:
MSMg01no064_j10.b1 PHD_FILE: MSMg01no064_j10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:38 2005
         (309 letters)



>mm_chr8_99951348_99952055
          Length = 708

 Score =  538 bits (278), Expect = e-157
 Identities = 299/306 (97%), Gaps = 1/306 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaccattctgcaggagccggggctgtgtgctgtgtggagatcagagccaagcaa 63
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaccattctgcaggatccggggctgtgtgctgtgtggagatcagagccaagcaa 263

                                                                       
Query: 64  ttcactgccttggagttgtaattcccctgcccacgccaaagcctggtttctgcaccatgt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 264 ttcactgccttggagttgtaattcccctgcccacgccaaagcctggtttctgcaccatgc 323

                                                                       
Query: 124 ctccacggaaagggcctctcatcccaccactcggcccaccacggggggcctccaggtccc 183
           |||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 324 ctccacgggaaggacctctcatcccaccactcggcccaccacggggg-cctccaggtccc 382

                                                                       
Query: 184 cgaaggcggttatccctgcggtcgccttctctggcagctcgagtcttcttctcttccaca 243
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgaaggcggttatccctgcggtcgccttctctggcagctcgagtcttcttctcttccaca 442

                                                                       
Query: 244 ttcaggcggaccgcgcctcggaacatgatgtgcctattattaaggaccttctgaacaggt 303
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 443 ttcaggcggaccgcgcctcggaacatgatgggcctattattaaggaccttctgaacaggt 502

                 
Query: 304 tcagaa 309
           ||||||
Sbjct: 503 tcagaa 508


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 708
Length adjustment: 9
Effective length of query: 300
Effective length of database: 699
Effective search space:   209700
Effective search space used:   209700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)