BAC Information

Click to search

BAC

Clone NameMSMg01-064N20
Chromosome8 (Build37)
Map Location 32,609,692 - 32,610,003
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC547008, Dusp26, Rnf122, BC019943, Rbm13, Fut10, LOC666330, LOC666568, 7420700N18Rik, LOC100041329
Downstream geneEG330731, LOC100041340, Nrg1, 2010007E15Rik, EG666589, EG546052
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064N20.T7 (MSMg01no064_n20.b1)MSMg01-064N20.TJ (MSMg01no064_n20.g1)
ACCAG290216AG290217
length750734
length of high quality
(start - end)
316 (36 - 351)---
definitionCHROMAT_FILE: MSMg01no064_n20.b1 PHD_FILE: MSMg01no064_n20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:08 2005CHROMAT_FILE: MSMg01no064_n20.g1 PHD_FILE: MSMg01no064_n20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATCCA
TTTTTTTTATATTAATGTGAATTGGCTGGCATATAAAATGCCATTAGTGA
AGGAGAAAAGAGATTCCAGAAACTGAGCATACATCTACATATTAGATGAA
AGTGTTCCCAGTATGGGAAGTCGTGCCCATTTTAATTAGTCATGGATGAA
ATTAGGGAGGTATAAATAATTTTGTTTAGAAGATTAGCATTTTGCTTAAT
ATATAGAGAAAGTTGCTTTCAGAGTTGAAAACTGATTAAGATCTAATTGA
AAAAACAAGTGATTGACTAGCATATAAAAAGAGTTCTGAGGGAGATGGTT
TTGTTTTTAACCACCGCCCCACACATGTATGTAGACCTGAGACTGAACAT
AAGAGCCCTTGCAAAACAAGAAAACAGAGTACTAGACTATGTAATCCCAA
CATGCCTACAGCAAGAAGAGAGGTGGGGGCAGGAGGCTCTCCAAAGTGTA
CTGACATATGCAGTACAAGAATAACAAACCCTGCCTCAACAAGGTAGGTT
AGACCGATACCACACACACACACACACACTCTCATACACATATACACACA
CACACCCACTTATTTCCCAGGGCACATGTATGCTCCACATTCACGCACAC
TGATGGATTCATGTGCCCACATTACCCCATCCCCCCACTCACCCCTACAT
CACTCACCCCCTTCCCACCCTTTCTTGACCTCTTCACAGCATAATAACCG

AACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCGGAAAACCAGCCGGGCCCCA
AATTCAAAAATCCGCCGGCCTCGGCCTCCCAGGGGTGAAAATAAAGGGAA
GGCCCCACCCACTCCGGCTGGGTTAATCCTGGTTTTAAACTCCAAATTAA
AAACCCAGGGAATTCGGAAACCAAAGGAAGGGGAACCCCCCTTAAACCCC
AGAATTGGGAAGGTGAAGGAAGTGGGTCCCCGGGGGGGTTAAGGCCACTT
GGGCCAACAAAGGAAACTTTGGAATTGCCAAAACTATAACGGGGAAATCC
GGCCCAACATTATTTTTATAACCACCCCCCCCCAAATATCTCTATTGAAT
TCGGGTAAAAAGGGGACCTCCAGCAACACTAAAGAAAAATATGCGAAAAA
AGGGTAACAGGGTAAAAAACAAAGAACAAAACCAAGTCCAAAGCCCATTT
AACCAAGGGAAATGGGAAAGGTGGGTTTTACTAAAAAGCTATCGGCGGCG
GTAACAAAAACCAAAAATTCATCACTTTACAAAATCAAAGGTCAATCGGT
TGGCCCCCTTACGGAATTAAGGGAAGGGCCCCTTGACCTTACGGCTTTCA
GGCCTGGTTAAGGAAAACCTTCCTCACAGGGAATGTACAGGCCAAAGCTT
CCCTACCTGTTGGTAGGAAACCACATAGGATACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_n20.b1 MSMg01no064_n20.b1 CHROMAT_FILE:
MSMg01no064_n20.b1 PHD_FILE: MSMg01no064_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:08 2005
         (316 letters)



>mm_chr8_32609489_32610204
          Length = 716

 Score =  596 bits (308), Expect = e-175
 Identities = 311/312 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcatccattttttttatattaatgtgaattggctggcatataaaatgccattagt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcatccattttttttatattaatgtgaattggctggcatataaaatgccattagt 263

                                                                       
Query: 64  gaaggagaaaagagattccagaaactgagcatacatctacatattagatgaaagtgttcc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gaaggagaaaagagattccagaaactgagcatacatctacatattagatgaaagtgttcc 323

                                                                       
Query: 124 cagtatgggaagtcgtgcccattttaattagtcatggatgaaattagggaggtataaata 183
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 324 cagtatgggaagtcgtgcccattttaattagtcatggatgaaattagggaggaataaata 383

                                                                       
Query: 184 attttgtttagaagattagcattttgcttaatatatagagaaagttgctttcagagttga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 attttgtttagaagattagcattttgcttaatatatagagaaagttgctttcagagttga 443

                                                                       
Query: 244 aaactgattaagatctaattgaaaaaacaagtgattgactagcatataaaaagagttctg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaactgattaagatctaattgaaaaaacaagtgattgactagcatataaaaagagttctg 503

                       
Query: 304 agggagatggtt 315
           ||||||||||||
Sbjct: 504 agggagatggtt 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)