BAC Information

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BAC

Clone NameMSMg01-064P16
Chromosome8 (Build37)
Map Location 46,430,910 - 46,431,217
singlet/doubletsinglet
Overlap geneBC035537
Upstream geneLOC100039508, Fat1, LOC100039673, Mtnr1a, EG622523, F11, Klkb1, Cyp4v3
Downstream geneTlr3, Sorbs2, Pdlim3, Ccdc110, 1700029J07Rik, 1810047C23Rik, Ankrd37, Lrp2bp, Snx25, 4933411K20Rik, Slc25a4, LOC621269, LOC100039875, LOC667325, Helt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064P16.T7 (MSMg01no064_p16.b1)MSMg01-064P16.TJ (MSMg01no064_p16.g1)
ACCAG290298AG290299
length740735
length of high quality
(start - end)
316 (46 - 361)---
definitionCHROMAT_FILE: MSMg01no064_p16.b1 PHD_FILE: MSMg01no064_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:21 2005CHROMAT_FILE: MSMg01no064_p16.g1 PHD_FILE: MSMg01no064_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTATACAGATGGCTATACCCATGGTTTTATTTTATTTTTTTTAGTT
ATAATACTTTCCCAGGCGTTTAACAAAAGCAAGTGTTATCCATATAACAA
CGCTATCATGCATCGGCCTTTAAATCAAGAACAAATGTCAGCTAATTATG
GACGCTGTAGACATGACCTTGCGCATGTACACTGTTTCAAATTACAAGAG
GGTGCTGGCAGGGAATCACCAATAGGACTTTTCTTATAAAATGACTAAGT
TCTCACAACTAAACCTCCAGACAGTTTAAAACGGCTTCTAGTACTGGTTT
TTTTTTATTTTTTTAACTCACCCCCCCCACACTCCATATTTTATTCCCTG
CCCCCCCANCCCCACCCGATAAAAAAAAAAATGTTCCACATCCCATACCT
CCTCCCCACCCCCCACCCCACCTGACCTCTAAACTCCCTGGGGCCTCCAG
TCTCTTGAGGGTTAGGCGCATCATCTCTGAATGAACATAGACCAGGCAGC
ATACACCAGCTGATATGAGGCCCCCAACACACCTACAGTAGAGGACTATG
GCTCTATTTTTAAACTGTTATGCTGTTACACTAGCTCCTCTCACTAGCTA
AGTGTCTGTCCTTTGCTGTCTGCTGATAACGGCACCCTACTTACACTACA
GCTCTAGTTTGAGCTGTCTCCCCCTACTGGCCGCTGTGCG
CTCGATGAAGTNGGAAGCCCGGGGGGCCGCCGGGCCGCCAACATTTAGGG
GACACAATAAAAGAATCCGCGAAATTCCCCACCAAGAAGAAAAATAAATT
GGAAAATTTCCCGGAAGGTCCTGAAATAATAAGAAGTACCCCCCAGGTGG
GGAACTCCTAAGGTTCCAAGGAAAAGAATTCCAGGAATTTTGAAAAGGAA
CTTCGAACCTGGACCCCCCAAGTCCGAAGTCCTTCCCTGGGCCACTTAAA
GGAACCCTTCCCAAAACCAGGTTAAAAAAATAATAATCCAGCCCGGATAA
TTAAAAGCCAAATTAAAGAACCCTTATAATGGAAGGAATGGATTGGCCTA
AAGGAAAAAAAAATTATTGTTTTTCCCCCCCCCCCCCGAAATTCAAAAAG
AAAACAGGGTTCAAATAGAAAACGCCCAAAAAAAAAAAAGGAACCCCTAA
AGGCTTAAGGCGTTAAAAAATGGAGGGAAAGGCCCCTTAAGAAAAAGGAC
CTCTTTGGCACCAAAAAAAAAAAATAAGGGGGGGAAGAAAGGAACAAAAT
TAACCCCTAATAACCGCTGAAAGGACTTGGAAAAGGCCGCCGGTCCGAAA
AATAATGGAAAAAGGGGGCCCAAATTCCGAAAACCCAAAACTTCCTTAAA
TGGAAACCCAAAACCCGTTATCCACCAAGGTTCCAATAAACGGGCCCGGT
TGGACCATCCTGGAAAAGAACCTGGCTATCCAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_p16.b1 MSMg01no064_p16.b1 CHROMAT_FILE:
MSMg01no064_p16.b1 PHD_FILE: MSMg01no064_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:21 2005
         (316 letters)



>mm_chr8_46430649_46431364
          Length = 716

 Score =  557 bits (288), Expect = e-163
 Identities = 303/308 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctatacagatggctatacccatggttttattttattttttttagttataatactt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gaattctatacagatggctatacccatggttttattttattttttttagttataatactt 510

                                                                       
Query: 65  tcccaggcgtttaacaaaagcaagtgttatccatataacaacgctatcatgcatcggcct 124
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tcccaggcttttaacaaaagcaagtgttatccatataacaacgctatcatgcatcggcct 450

                                                                       
Query: 125 ttaaatcaagaacaaatgtcagctaattatggacgctgtagacatgaccttgcgcatgta 184
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 449 ttaaatcaagaacaaatgtcagctaattatggatgctgtagacatgaccttgcgcatgta 390

                                                                       
Query: 185 cactgtttcaaattacaagagggtgctggcagggaatcaccaataggacttttcttataa 244
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 389 cactgtttcaaattacaagagggtgctggcagggaatcaccaatgggacttttcttataa 330

                                                                       
Query: 245 aatgactaagttctcacaactaaacctccagacagtttaaaacggcttctagtactggtt 304
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 329 aatgactaagttctcacaactaaacccccagacagtttaaaacggcttctagtactgttt 270

                   
Query: 305 ttttttta 312
           ||||||||
Sbjct: 269 ttttttta 262


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)