BAC Information

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BAC

Clone NameMSMg01-065B12
Chromosome8 (Build37)
Map Location 65,922,032 - 65,922,365
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384830, LOC100040804, LOC665267, Spock3
Downstream geneLOC384831, EG244495, Tll1, LOC100040989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065B12.T7 (MSMg01no065_b12.b1)MSMg01-065B12.TJ (MSMg01no065_b12.g1)
ACCAG290385AG290386
length696692
length of high quality
(start - end)
622 (42 - 663)493 (69 - 561)
definitionCHROMAT_FILE: MSMg01no065_b12.b1 PHD_FILE: MSMg01no065_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:30 2005CHROMAT_FILE: MSMg01no065_b12.g1 PHD_FILE: MSMg01no065_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCACCTGTTCCCTACTGAATGGCAGAGAAGCACCTGAAAAAATGTTCAA
CATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCCGAGATTCCAC
CTCATACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATG
CTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATT
GCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAA
TTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATA
CCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCA
TAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCC
TCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTA
CTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGATGGACCT
GGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGAACTCACACA
ATATGTACTCACTGATAAGTGGATATTAGCCCCAAACCTAGGATACCCAA
GATATAAGATACAATTTGCTAAACACATGAAACTCAGGAAGAATGC
ACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATTATTGACTCAGCACTCTGAGGTCATAAAGA
ATCCGAGAACCAATCATAATATGTTGGCTTAATGTTTAGTATTTTGTGTT
GATGTTATATGAACCAACCATGCCAACTAACACACACATGCATGCATGTG
CATTTACACACACACACACACACACACACACACACACACAATCTAAAGCT
TTCTCAGAGGAAATATACTGTACATCTGACCTGTACAGCGGGCCCAGTTA
TTCGTTGGTCTCCAGGGGACTCTTGAAACCAAATGGGGGGATGAGAGAGA
AACGGAGCCAAGCACAGAAAAGACATGGAGTCAATCTGAATCTTGTCAAG
GTCTCATTGTGTTCAGCAAAACTTAAAATTTTTATACACAAAGATCAAAG
GGAAAACAACCCTTACGCAGAAGGGCAGGGGAGGGTACTGGTAATTTTCC
TTGGTGACTACAATGATATCTAAAAGTATATCTTGTGGTTATGACATCTG
CTGTTTACGTCAGTCAGGTCTGGCGTCATCTTGTGGTAATTGTTGGTGAC
CTTCATCTGGACTTAGTCAGCTTGAGGAGGGGGTCCAATCTGGTAATAGT
CCATTGATGACCTTTGTCTGGACTTAATCACCTTGTGGAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_b12.g1 MSMg01no065_b12.g1 CHROMAT_FILE:
MSMg01no065_b12.g1 PHD_FILE: MSMg01no065_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:30 2005
         (493 letters)



>mm_chr8_65922032_65922921
          Length = 890

 Score =  561 bits (290), Expect = e-164
 Identities = 323/338 (95%), Gaps = 11/338 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   attattgactcagcactctgaggtcataaagaatccgagaaccaatcataatatgttggc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 334 attattgactcagcactctgaggtcataaagaatccgagaaccaatcataatgtgttggc 275

                                                                       
Query: 61  ttaatgtttagtattttgtgttgatgttatatgaaccaaccatgccaactaacacacaca 120
           ||||||||||||| |||||||||||||||||||||||||||| ||||||||  |||||||
Sbjct: 274 ttaatgtttagta-tttgtgttgatgttatatgaaccaaccacgccaacta--acacaca 218

                                                                       
Query: 121 tgcatgcatgtgcattt------acacacacacacacacacacacacacacacacacaat 174
           |||||||||||| ||||      |||||||||||||||||||||||||||||||||||||
Sbjct: 217 tgcatgcatgtgtatttacacacacacacacacacacacacacacacacacacacacaat 158

                                                                       
Query: 175 ctaaagct-ttctcagaggaaatatactgtacatctgacctgtacagcgggcccagttat 233
           |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 ctaaagttattctcagaggaaatatactgtacatctgacctgtacagcgggcccagttat 98

                                                                       
Query: 234 tcgttggtctccaggggactcttgaaaccaaatggggggatgagagagaaacggagccaa 293
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 97  tcgttggtctccaggggactcttgaaaccaaat-gggggatgagagagaaacggagccaa 39

                                                 
Query: 294 gcacagaaaagacatggagtcaatctgaatcttgtcaa 331
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 38  gcacagaaaagacatggagtcaatctgaatcttgtcaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 890
Length adjustment: 10
Effective length of query: 483
Effective length of database: 880
Effective search space:   425040
Effective search space used:   425040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)