BAC Information

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BAC

Clone NameMSMg01-065I06
Chromosome8 (Build37)
Map Location 27,473,247 - 27,473,483
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC670822, LOC100040998, Fgfr1, D030041N04Rik, LOC100042416, Whsc1l1, Ppapdc1, Bag4, Lsm1, Star, Ash2l, Kcnu1, Hgsnat, 4930444A02Rik, Fnta, Hook3, 1700047A11Rik, Rnf170, Thap1
Downstream geneZfp703, Erlin2, Prosc, Gpr124, Brf2, Rab11fip1, Got1l1, Adrb3, Eif4ebp1, LOC732482, Tex24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065I06.T7 (MSMg01no065_i06.b1)MSMg01-065I06.TJ (MSMg01no065_i06.g1)
ACCAG290707AG290708
length682675
length of high quality
(start - end)
241 (78 - 318)237 (77 - 313)
definitionCHROMAT_FILE: MSMg01no065_i06.b1 PHD_FILE: MSMg01no065_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:03 2005CHROMAT_FILE: MSMg01no065_i06.g1 PHD_FILE: MSMg01no065_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGTGTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAGAATGCG
CGGAATTCCATGATTTTGCGCCCACTGTCGTACTTCTATGGCTGTGAAAT
GAGTTCCTTGGTCAGAAGCTAATTGTGTGGAATACCATGACGATAGATAA
GGCATTCTGTCAGTCCCTGAATGGTGGTTTTAGCAGAGGCTTTACGTGCA
GGAAAGGCAAATCCATAACCAGAATAAGTATCTACTCCAGTAAGAACAAA
ACGCTGTCCTTTCCATGAAGGAAGTGGTCCAATGTAGTCAACCTGCCACC
AGGTTGCTGGCTGGTCACCTCTAGTAATGGTGCCATATCTGGGGCTCAGT
GTTGGTTTCTGCTGTTGGCAGATCTGGCAATCAGCAGTAGCTGTAGCCAG
GTCAGTCTTGGTGAGTGGAAGCCCGTGTTGCTGAGCCCAAGCATAACCTC
CATCTCGACTATCATGGCCACTTTGTTCATGCGCCTATTGAGCAATGACA
GGGATGGTTGGGTAGAGAGGCTGACTGTCCACAGAACGGGTCATCTTATC
CACTTGATTATTGAACTCCTCCTCAGCTGAAGTCACCTTTTGGTGAGCAT
TTACTTGGTATACAAATATCTTCACATCCTTTGCCCATTTGGAGAAATCT
ATCCACATACTTCTTCCCCAGACGTCTTCCCC
AATCATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTGCTGAAAATCTAGAGGAATATGAGTCTGGAGATCATTGGT
GTTAGAAGTCTCACTTCCTATATAACAATGTTGAGTGCCCACGGGGGCCA
TGGTGAGGTCTGGTGGCTCAGATGATGGTGAAGTTGGGTGTGTATTGCAG
CCACCATAGCTTTTAACCTCAGCCCCAGCTCTCCTGGGCTGTACCCCGCA
GACACCTTAAAGTCTCTCTGTGGACGACCCCCCAGCTCCTCTGCTTCCCA
CATTTATGGAGGGAGTTTTCTCTTGGTGTTGGATGTTCTGGACTTTTCAA
TGAGACCCAGTGAGGGAAGACTAGCCCCTGTGCGAGGGCCGCCATCTTTC
TCAAAACTTGGACAGAAAATTTTAGGAGTTGAAGAAAAAAAATCATTACA
GTTCATAAAGGGTTCAGAAGCTCACCTGAAAACCTAATTAATCACAGGCG
GTATGCTCCAGTGTTCCAGTTAATCAGGGGCTTTCTGTTCTCCCTTTGTA
TTGCGAGCCCGCAGCTCTAATGCACCATTCAGCTTCAAGTGGGGGCTCAG
TTGATACTTCTTGACTGACAAAAGCAATTAAAAGCATAATACAAATTCCT
TCCATACCTTGTTATTATTGTGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_i06.g1 MSMg01no065_i06.g1 CHROMAT_FILE:
MSMg01no065_i06.g1 PHD_FILE: MSMg01no065_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:03 2005
         (237 letters)



>mm_chr8_27473047_27473683
          Length = 637

 Score =  451 bits (233), Expect = e-131
 Identities = 236/237 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatatgagtctggagatcattggtgttagaagtctcacttcctatataacaatgttgagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatatgagtctggagatcattggtgttagaagtctcacttcctatataacaatgttgagt 260

                                                                       
Query: 61  gcccacgggggccatggtgaggtctggtggctcagatgatggtgaagttgggtgtgtatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcccacgggggccatggtgaggtctggtggctcagatgatggtgaagttgggtgtgtatt 320

                                                                       
Query: 121 gcagccaccatagcttttaacctcagccccagctctcctgggctgtaccccgcagacacc 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcagccgccatagcttttaacctcagccccagctctcctgggctgtaccccgcagacacc 380

                                                                    
Query: 181 ttaaagtctctctgtggacgaccccccagctcctctgcttcccacatttatggaggg 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaaagtctctctgtggacgaccccccagctcctctgcttcccacatttatggaggg 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)