BAC Information

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BAC

Clone NameMSMg01-065P08
Chromosome8 (Build37)
Map Location 59,339,840 - 59,456,984
singlet/doubletdoublet
Overlap geneLOC654355
Upstream geneAdam29, Glra3, LOC664812, Hpgd, LOC664948, BC088983, Fbxo8, LOC100040431, EG624433
Downstream geneLOC100040515, Hand2, Scrg1, Sap30, Hmgb2, LOC547012, Galnt7, LOC100040634, LOC100040711
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065P08.T7 (MSMg01no065_p08.b1)MSMg01-065P08.TJ (MSMg01no065_p08.g1)
ACCAG291045AG291046
length689696
length of high quality
(start - end)
234 (75 - 308)472 (74 - 545)
definitionCHROMAT_FILE: MSMg01no065_p08.b1 PHD_FILE: MSMg01no065_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:36 2005CHROMAT_FILE: MSMg01no065_p08.g1 PHD_FILE: MSMg01no065_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,456,753 - 59,456,984)(59,339,840 - 59,340,311)
sequence
AAATTTGCGGCGCTAAACGACTCCTANATCGNGAGGTGGGCGGAATTCCT
ATCATGCCCGAAAGAAGAAATGTGGATTGTGTAGCCTTGTTCTCTCATAG
CGGGAACCATAACAAACAGGGCCTACCAAGAACACGTAGGGTATTTTCTG
ACTCCAGAATAACTATGACTATTATTAAACCAATAGGATTAAAGGGGTAC
AGGAAAAGGAAAGTCAAGCTGGCTTAACTAAAAAGAACCTGGAGAGTCAT
GAGGAGAAAGTCTGGAAATGACATGGCAAGAAGTCTAAATTCAAAAACAA
ATGAAATCTTTTTTAAGAATGAGTGATAACATACTTCCATTAATATCTAA
CTATATAGTGATTTCATTGGTTTAGTTCATTGTAGTTGAAAAATAAAATG
AGGAAATTAGACGTTCTTCCCTCTTTGAGATGAAATATTTGTTCTCTTTG
GTGGTGTTCTCTGCCTGGCTACGGATACTTGCTCTAGTGTATCTGTGATG
TCACTCTTCATTTCGCCAAGGCCCAGTCTTACATCCCCACCCCGCCCCCC
GCCCATCCTGGTTAGTAAATGACTATTAAAGCTAACTACTGCCGGGCAGT
GGTGGCACACGCCTTTACTCCCAGCACTTGTGAGGTTTAGGCAGGCAGAT
TTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAATTT
TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATCAAACATTTAAGGTATAAGCCACTG
GTAACAAAAATGAAAATTAAAGAGATTTCCTGTCTCAAATAGCAGCACAC
AAAAGCTAAGATTTTAAAACCACTCATAATTCCTAGCGAACTGTTTAAAA
AGAGACAGGAAGTGAAAAACAGTTTAGAATTCCAAGTCTGTCCTCCCTTG
CAACGAGACTGGGAATTTCAGGCATTAATTAATGAAATGTTTTCAGCTTT
GTTGTTAATTCTCTTCTGCAAAGCAAGATTCTTCGCAGCACTGTCTCTTC
ACAGCCTCCTCGTAGATCTTAATACAATGTTCAGGAATATCTAAAGGAAA
GCAGACATGCCTGTCACAGTTGTAAACTTATTTGGGAGAAGTTATGGCCC
TGACTGTACTGTATCTGCGTTTGTTGATTCTGCACACAAATCTTTGAGGG
GTGTTCTTTTCCTTCTGAGCGGTTTGCATCATAAACTTTAGTGAACACCC
AAATGGAGAAAACAGTATGCAGTTAAATGTTGAAGTCTGGTTTCCTCTTA
TCCAATAACCCCCCTTTTTACCTTATTTAAATAAAAGCAAAGATCATTAC
AGAGAGCCTATTGGCTTCCTAGTCTTTCAAATTATACTGATGCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_p08.b1 MSMg01no065_p08.b1 CHROMAT_FILE:
MSMg01no065_p08.b1 PHD_FILE: MSMg01no065_p08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:36 2005
         (234 letters)



>mm_chr8_59456553_59457186
          Length = 634

 Score =  418 bits (216), Expect = e-121
 Identities = 228/232 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gattgtgtagccttgttctctcatagcgggaaccataacaaacagggcctaccaagaaca 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 432 gattgtgtagccttgttctctcataacgggaaccataacaaacagggcctaccaagaaca 373

                                                                       
Query: 61  cgtagggtattttctgactccagaataactatgactattattaaaccaataggattaaag 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 372 cgtagggtattttctgactccagaataactatgactattattaaaccaatagaattaaag 313

                                                                       
Query: 121 gggtacaggaaaaggaaagtcaagctggcttaactaaaaagaacctggagagtcatgagg 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 312 gggtacaggaaaaggaaattcaagctggcttaactaaaaagaacctggagagttatgagg 253

                                                               
Query: 181 agaaagtctggaaatgacatggcaagaagtctaaattcaaaaacaaatgaaa 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 agaaagtctggaaatgacatggcaagaagtctaaattcaaaaacaaatgaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no065_p08.g1 MSMg01no065_p08.g1 CHROMAT_FILE:
MSMg01no065_p08.g1 PHD_FILE: MSMg01no065_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:36 2005
         (472 letters)



>mm_chr8_59339640_59340511
          Length = 872

 Score =  897 bits (464), Expect = 0.0
 Identities = 470/472 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcaaacatttaaggtataagccactggtaacaaaaatgaaaattaaagagatttcctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcaaacatttaaggtataagccactggtaacaaaaatgaaaattaaagagatttcctgt 260

                                                                       
Query: 61  ctcaaatagcagcacacaaaagctaagattttaaaaccactcataattcctagcgaactg 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 ctcaaatagcagcacacaaaagctaagattttaaaaccacttataattcctagcgaactg 320

                                                                       
Query: 121 tttaaaaagagacaggaagtgaaaaacagtttagaattccaagtctgtcctcccttgcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttaaaaagagacaggaagtgaaaaacagtttagaattccaagtctgtcctcccttgcaa 380

                                                                       
Query: 181 cgagactgggaatttcaggcattaattaatgaaatgttttcagctttgttgttaattctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgagactgggaatttcaggcattaattaatgaaatgttttcagctttgttgttaattctc 440

                                                                       
Query: 241 ttctgcaaagcaagattcttcgcagcactgtctcttcacagcctcctcgtagatcttaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctgcaaagcaagattcttcgcagcactgtctcttcacagcctcctcgtagatcttaat 500

                                                                       
Query: 301 acaatgttcaggaatatctaaaggaaagcagacatgcctgtcacagttgtaaacttattt 360
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaatgttccggaatatctaaaggaaagcagacatgcctgtcacagttgtaaacttattt 560

                                                                       
Query: 361 gggagaagttatggccctgactgtactgtatctgcgtttgttgattctgcacacaaatct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggagaagttatggccctgactgtactgtatctgcgtttgttgattctgcacacaaatct 620

                                                               
Query: 421 ttgaggggtgttcttttccttctgagcggtttgcatcataaactttagtgaa 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgaggggtgttcttttccttctgagcggtttgcatcataaactttagtgaa 672


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)