Query= MSMg01no066_f15.b1 MSMg01no066_f15.b1 CHROMAT_FILE:
MSMg01no066_f15.b1 PHD_FILE: MSMg01no066_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:07 2005
(565 letters)
>mm_chr8_8611021_8611984
Length = 964
Score = 1033 bits (534), Expect = 0.0
Identities = 555/562 (98%), Gaps = 2/562 (0%)
Strand = Plus / Plus
Query: 4 ggaattctttatctaggagcaggacccagtgagatcctccttccatgttacctgtccatt 63
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattctttatctaggagtaggacccagtgagatcctccttccatgttacctgtccatt 264
Query: 64 ggtgttgtcattgctcaggtcttgtttaggcagccatgttggcgaggtataatggtgtag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggtgttgtcattgctcaggtcttgtttaggcagccatgttggcgaggtataatggtgtag 324
Query: 124 cttccctgtcatttctagaaaactcaatctcacagcagatttttactgaaaaaaaatttt 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 325 cttccctgtcatttctagaaaactcaatctcacagcagatttttactgaaaaaaaa-ttt 383
Query: 184 tttttaataccacgacgagtttcatagactcagtagttggtcatattatgaaatgctttt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tttttaataccacgacgagtttcatagactcagtagttggtcatattatgaaatgctttt 443
Query: 244 gggtgtctgctagatataagtgactttgttgttatatgggaacattcctccttctgagat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gggtgtctgctagatataagtgactttgttgttatatgggaacattcctccttctgagat 503
Query: 304 gctaggatgagggaagagccaaattttacatgtaaaatgcataagattgtacacacacct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gctaggatgagggaagagccaaattttacatgtaaaatgcataagattgtacacacacct 563
Query: 364 atgtaagtgtgctagaacacaggctatgcatttgtgattaaaatacagtaagctggattc 423
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 564 atgtaagtgtgctagaacacaggctatgcacttgtgattaaaatacagtaagctggattc 623
Query: 424 tagacttctttaaaaaaaaaacttttgttttatttgaaagttttcaaagtaaaagatcac 483
||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 624 tagacttcttttaaaaaaaa-cttttgttttctttgaaagttttcaaagtaaaagatcac 682
Query: 484 agaattggggattcagatagtgtctttctgccatgctatggggggagagttcagaaacat 543
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 agaattgggaattcagatagtgtctttctgccatgctatggggggagagttcagaaacat 742
Query: 544 ccatattccaatgccagcattc 565
||||||||||||||||||||||
Sbjct: 743 ccatattccaatgccagcattc 764
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 964
Length adjustment: 10
Effective length of query: 555
Effective length of database: 954
Effective search space: 529470
Effective search space used: 529470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no066_f15.g1 MSMg01no066_f15.g1 CHROMAT_FILE:
MSMg01no066_f15.g1 PHD_FILE: MSMg01no066_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:07 2005
(418 letters)
>mm_chr8_8731120_8731938
Length = 819
Score = 688 bits (356), Expect = 0.0
Identities = 397/416 (95%), Gaps = 14/416 (3%)
Strand = Plus / Minus
Query: 1 ctgttcac-agacctgtggtcatttatctaggcaaccacacactgaagatgcagaatttg 59
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 ctgttcacaagacctgtggtcatttatctaggcaaccacacactgaagatgcagaatttg 732
Query: 60 aacatttttagaaatgctggatgctccgatttgacattcatatccagagaactccgggct 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 aacatttttagaaatgctggatgctccgatttgacattcatatccagagaactccgggct 672
Query: 120 ggtagcataccctaagtgacgtggagcttatataaccaagtagtcagtggctccctggcc 179
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ggtagcataccctaagtgacatggagcttatataaccaagtagtcagtggctccctggcc 612
Query: 180 ctcgtttaggtaatcgatgtcatcacctgggcccacagtctcatccagtccccattgtcc 239
||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ctccttta-------gatgtcatcacctgggcccacagtctcatccagtccccattgtcc 559
Query: 240 tgtctccaaaatgcacaactgaaatagatgctgtgacggttagtttaactgccaattcaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 558 tgtctccaaaatgcacaactgaaatagatgctgtgacggttagtttaactgccaaatcaa 499
Query: 300 catccagggggtgacccgccaggctcatccatgaagaatgggaaggacaatctaaagtac 359
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 498 catccagagggtgacccgccaggctcatccatgaagaattggaaggacaatctaaagtac 439
Query: 360 cagaatatgtgcaggagagattgttat-gacctgcgggtgggggtggggcagggca 414
||||||||||||||||||||||||||| ||||| || ||||| |||||||||||
Sbjct: 438 cagaatatgtgcaggagagattgttatggacct---gg-ggggg-ggggcagggca 388
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 819
Length adjustment: 9
Effective length of query: 409
Effective length of database: 810
Effective search space: 331290
Effective search space used: 331290
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
