Query= MSMg01no066_l04.b1 MSMg01no066_l04.b1 CHROMAT_FILE:
MSMg01no066_l04.b1 PHD_FILE: MSMg01no066_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:35 2005
(472 letters)
>mm_chr8_92724583_92725454
Length = 872
Score = 913 bits (472), Expect = 0.0
Identities = 472/472 (100%)
Strand = Plus / Minus
Query: 1 catggacttctatgtagctattatataagaaacacatcaacctgtattgacatgggagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 catggacttctatgtagctattatataagaaacacatcaacctgtattgacatgggagtt 486
Query: 61 gtttgtaatgtggaagttgaacacacatactttgtgtttttatcttaagactatataggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gtttgtaatgtggaagttgaacacacatactttgtgtttttatcttaagactatataggt 426
Query: 121 atcagaatacatttctacacatatttataaggaacacatgaaggaggatagccattaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 atcagaatacatttctacacatatttataaggaacacatgaaggaggatagccattaaac 366
Query: 181 ttttatcagaggttacacccgaggagtgacaaaggaaagaaggttagatttcagatttct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ttttatcagaggttacacccgaggagtgacaaaggaaagaaggttagatttcagatttct 306
Query: 241 ctgttagaaagatgttcttgtaggtcttcttctcttttttcttctcttaatttttgagag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ctgttagaaagatgttcttgtaggtcttcttctcttttttcttctcttaatttttgagag 246
Query: 301 gatagaatttcatgtctttctaaaatgttaaaatattttaaaaaatatatttatttagta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gatagaatttcatgtctttctaaaatgttaaaatattttaaaaaatatatttatttagta 186
Query: 361 tgtgcatacatgtgcctgcatgtatgtatatgtactacatgtatgataaaggaattttgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 tgtgcatacatgtgcctgcatgtatgtatatgtactacatgtatgataaaggaattttgg 126
Query: 421 aagtcatagatggtagacatcagagttcttttgatgaacatatgttgcttaa 472
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 aagtcatagatggtagacatcagagttcttttgatgaacatatgttgcttaa 74
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space: 398244
Effective search space used: 398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no066_l04.g1 MSMg01no066_l04.g1 CHROMAT_FILE:
MSMg01no066_l04.g1 PHD_FILE: MSMg01no066_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:35 2005
(444 letters)
>mm_chr8_92608171_92609015
Length = 845
Score = 783 bits (405), Expect = 0.0
Identities = 425/432 (98%), Gaps = 1/432 (0%)
Strand = Plus / Plus
Query: 14 ctggatccatgtccttggacctgccgtgaggtn-aaacatggctaagagaacatatgcca 72
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 214 ctggatccatgtccttggacctgccgtgaggtagaaacatggctaagagaacatatgcca 273
Query: 73 gatgccccctacctcatcctgtccaggaagcaggtgggggacaagatacattctagagca 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gatgccccctacctcatcctgtccaggaagcaggtgggggacaagatacattctagagca 333
Query: 133 gggagatcggggttcatatctcctccagtaacaccccacttccttccaatcatagtatca 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gggagatcggggttcatatctcctccagtaacaccccacttccttccaatcatagtatca 393
Query: 193 tataaacctagctaagagggaatccatcggctagatcagagccctccagatctaatgact 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tataaacctagctaagagggaatccatcggctagatcagagccctccagatctaatgact 453
Query: 253 tcctaagcccatcagttggcagcaaagtcctcaagaatgatcgtttcctatccaaaccta 312
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tcctaagcccatcagctggcagcaaagtcctcaagaatgatcgtttcctatccaaaccta 513
Query: 313 gcactatcaagcagcacttgttctccaagacactccccctagcagatcaacataccactg 372
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 514 gcactatcaagcagtacttgttctccaagacactccccctagtagatcaacataccactg 573
Query: 373 ccatgtatatttggccttgctggcctatggtgatagcagtattcacaaagctggtagttg 432
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ccatgcagatttggccttgctggcctatggtgatagcagtattcacaaagctggtagttg 633
Query: 433 ctattgtatgtt 444
||||||||||||
Sbjct: 634 ctattgtatgtt 645
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 845
Length adjustment: 10
Effective length of query: 434
Effective length of database: 835
Effective search space: 362390
Effective search space used: 362390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
