BAC Information

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BAC

Clone NameMSMg01-066L05
Chromosome8 (Build37)
Map Location 86,432,472 - 86,432,910
singlet/doubletsinglet
Overlap geneLphn1
Upstream geneRnf150, LOC100039688, Tbc1d9, Ucp1, Elmod2, 4933434I20Rik, Clgn, Scoc, LOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97, EG384857
Downstream geneAsf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130, Cacna1a, Ier2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066L05.T7 (MSMg01no066_l05.b1)MSMg01-066L05.TJ (MSMg01no066_l05.g1)
ACCAG291611AG291612
length734705
length of high quality
(start - end)
241 (72 - 312)439 (72 - 510)
definitionCHROMAT_FILE: MSMg01no066_l05.b1 PHD_FILE: MSMg01no066_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:35 2005CHROMAT_FILE: MSMg01no066_l05.g1 PHD_FILE: MSMg01no066_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGAGTCCGCGGAA
TTCCTTCAGGTTCCCGGGAATGGCTCATCAGTAGAGTGTCACCTGGCAGT
AGGAAGCATGAGTTAGATCCTCTCCACTACTTATGTAGGGTAGGGCCAGG
GAGCTAGCTTAGTGGGTAAGGGTATTTGCTAGCAAGCCTGAAACCCTGAG
TTTGACCCACGTAATAAAAGGAGAGAATTGAATCCTGCAGGTTGTTCTCT
GATCCCCATATGTACACAAACATAATAAATGAATGTGGTGATGATGATGG
TGATGGTGGTGATGATTGTTTTTTTTTTTCTCTTTCTCTCTTCCCTCTAT
TCCCACATCTTTTTCCCCTCCCTTCATTTTACTTTTTCTTTCTCTATCAA
TTCTCTCTATTTTTCTCCCTTCTCCTCCCATTATCTATATACACCTTTCA
TATTTTCTATTTTTTCCCTCTCCCTCCCCCCTCTACCTTCCCTCTATTCT
CTCCTCATTTCCTTTGTCCGTTCTATATATTCTCTTTCTAATTTTTTTCA
CTACCTTTCTCTTCTCCCCTTCTATTTATCCCTCTCGCTTTCTTTTTGTT
TTCTAACACTTTCTTTTCTCTCCGTCCTAACTTTTCTATCTCACTTGTTT
TTCATTCACTCTTTATCACTTGTCCATTTCCTATTTACTTCTTTCTTTTC
TCACAAACCCTCTTCCCTTCTCTCCCACCCTGCT
AATGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGTTTGTAGACCAGGCTGGCCTTGACCCT
ATGACAGTCCCATTTCTGCCTCCAGCCAGGGCAGCCTTCAACATTTCTCT
ATCGAATGCTTCCATCTCCAGTTCCTGCTCTGCTGGGCTCTGGGACACAC
TCATACACAGCCCTGCAGAGCCAGCACCCAATGGGAGAGGAAAGCATATG
ATGAAAATGCCGGGTTCCTCCCTCGGCATCAGAGCCGTGGGAGATGAAGA
AGTAGGGGCAGGGCAGAGCGTAGCATACTGGAGTTGGCAGGCCTTCCTGG
GCTCTGAGGAAGCATGAGAGCGAAGTCCAGTAGACAAGGGGGTGGGCAGG
ATATGCAAAGATCCTGGGGAAGGGCTGTGTGGAACCTCAGTGAAGGCTTT
GCCTTTTGGTCTAAGGAAGGTGGGAGCCATGGGGTGTTCTCAGAGAACCC
GAGGGAATGATTCAGGGTGTAGCTGGCTACCCCGACCTCACTTCTTATAA
GGGAAGAAGTGACTTTATGATAAAGATGTCACAGGGATTCATTGCAGCTG
TCTTGTGGGGAAGTGTCTGTAGTATTGAGTATGCTCTGGTGACCTGTCCT
CGGCCTAGCCTTCTTGGGAAAGTTTCATGCCTCTGCTCTTATTCTGCTCA
AATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_l05.g1 MSMg01no066_l05.g1 CHROMAT_FILE:
MSMg01no066_l05.g1 PHD_FILE: MSMg01no066_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:35 2005
         (439 letters)



>mm_chr8_86432272_86433110
          Length = 839

 Score =  841 bits (435), Expect = 0.0
 Identities = 438/439 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtttgtagaccaggctggccttgaccctatgacagtcccatttctgcctccagccaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtttgtagaccaggctggccttgaccctatgacagtcccatttctgcctccagccaggg 260

                                                                       
Query: 61  cagccttcaacatttctctatcgaatgcttccatctccagttcctgctctgctgggctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagccttcaacatttctctatcgaatgcttccatctccagttcctgctctgctgggctct 320

                                                                       
Query: 121 gggacacactcatacacagccctgcagagccagcacccaatgggagaggaaagcatatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggacacactcatacacagccctgcagagccagcacccaatgggagaggaaagcatatga 380

                                                                       
Query: 181 tgaaaatgccgggttcctccctcggcatcagagccgtgggagatgaagaagtaggggcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaaaatgccgggttcctccctcggcatcagagccgtgggagatgaagaagtaggggcag 440

                                                                       
Query: 241 ggcagagcgtagcatactggagttggcaggccttcctgggctctgaggaagcatgagagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggcagagcgtagcatactggagttggcaggccttcctgggctctgaggaagcatgagagc 500

                                                                       
Query: 301 gaagtccagtagacaagggggtgggcaggatatgcaaagatcctggggaagggctgtgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaagtccagtagacaagggggtgggcaggatatgcaaagatcctggggaagggctgtgtg 560

                                                                       
Query: 361 gaacctcagtgaaggctttgccttttggtctaaggaaggtgggagccatggggtgttctc 420
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggacctcagtgaaggctttgccttttggtctaaggaaggtgggagccatggggtgttctc 620

                              
Query: 421 agagaacccgagggaatga 439
           |||||||||||||||||||
Sbjct: 621 agagaacccgagggaatga 639


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)