Query= MSMg01no066_l23.b1 MSMg01no066_l23.b1 CHROMAT_FILE:
MSMg01no066_l23.b1 PHD_FILE: MSMg01no066_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:39 2005
(238 letters)
>mm_chr8_99951393_99952029
Length = 637
Score = 406 bits (210), Expect = e-118
Identities = 231/238 (97%), Gaps = 1/238 (0%)
Strand = Plus / Plus
Query: 1 gagatcagagccaagcaattcactgccttggagttgtacttcccctgcccacgccaaagc 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 gagatcagagccaagcaattcactgccttggagttgtaattcccctgcccacgccaaagc 260
Query: 61 ctggtttctgcaccatgtctccacgggaagggcctctcatcccaccactcggcccaccac 120
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 ctggtttctgcaccatgcctccacgggaaggacctctcatcccaccactcggcccaccac 320
Query: 121 ggggggcctccaggtccccgaaggcggttatccctgcggtcgccttctctggttgctcga 180
||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 ggggg-cctccaggtccctgaaggcggttatccctgcggtcgccttctctggcagctcga 379
Query: 181 gtcttcttctcttccacattcaggcggaccgcgcctcggaacatgatgggcctattat 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtcttcttctcttccacattcaggcggaccgcgcctcggaacatgatgggcctattat 437
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 637
Length adjustment: 9
Effective length of query: 229
Effective length of database: 628
Effective search space: 143812
Effective search space used: 143812
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no066_l23.g1 MSMg01no066_l23.g1 CHROMAT_FILE:
MSMg01no066_l23.g1 PHD_FILE: MSMg01no066_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:39 2005
(587 letters)
>mm_chr8_100111086_100112073
Length = 988
Score = 909 bits (470), Expect = 0.0
Identities = 488/494 (98%), Gaps = 1/494 (0%)
Strand = Plus / Minus
Query: 95 ttataatcccattttagctgtaatagtaaggtttagggtttctttaaaaaggagactttt 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988 ttataatcccattttagctgtaatagtaaggtttagggtttctttaaaaaggagactttt 929
Query: 155 aagaactattagaatgtgaacttgcttgaaatggaagtttatatggataaatagatgtct 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 aagaactattagaatgtgaacttgcttgaaatggaagtttatatggataaatagatgtct 869
Query: 215 ttagttaagacactcaaaattttactactctattttgttttttaggaaaatgcaataatt 274
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 868 ttagttaagacactcaaaattttactactctattttgtttaagaggaaaatgcaataatt 809
Query: 275 ttatattataattaattttagggtttttaaaatccaattattttctgaataagctattaa 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 ttatattataattaattttagggtttttaaaatccaattattttctgaataagctattaa 749
Query: 335 acttatttctttatgtaaggagtgaactgaagagcttacagaagaatggttctaatgggc 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 acttatttctttatgtaaggagtgaactgaagagcttacagaagaatggttctaatgggc 689
Query: 395 ttttactctgctaatgaatcttcaacatttgctgcctgtcagactcatagaatccctcgc 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 ttttactctgctaatgaatcttcaacatttgctgcctgtcagactcatagaatccctcgc 629
Query: 455 tcccataaagcctgtcttcccacctgcccaaacctgggccaataccatagcaaggtcttt 514
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 628 tcccataaagcctgtcttcccacctgcccaaacctgggccaataccatagtaaggtcttt 569
Query: 515 ttt-gactgagagtttctacagaatgatgctatggagaggataaaagtggttcatcctca 573
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 568 ttttgactgagagtttctacagaatgatgctatggagaggataaaagtgattcatcctca 509
Query: 574 tttccaatttctca 587
||||||||||||||
Sbjct: 508 tttccaatttctca 495
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 988
Length adjustment: 10
Effective length of query: 577
Effective length of database: 978
Effective search space: 564306
Effective search space used: 564306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
