BAC Information

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BAC

Clone NameMSMg01-066O21
Chromosome8 (Build37)
Map Location 113,620,257 - 113,620,460
singlet/doubletsinglet
Overlap gene4930402E16Rik
Upstream geneGm1467, Calb2, BC025546, Hydin, LOC672398, Vac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl
Downstream gene9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl, Fa2h, Wdr59, Znrf1, Ldhd, Zfp1, Ctrb1, Bcar1, Cfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066O21.T7 (MSMg01no066_o21.b1)MSMg01-066O21.TJ (MSMg01no066_o21.g1)
ACCAG291787AG291788
length720714
length of high quality
(start - end)
204 (81 - 284)57 (80 - 136)
definitionCHROMAT_FILE: MSMg01no066_o21.b1 PHD_FILE: MSMg01no066_o21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:53 2005CHROMAT_FILE: MSMg01no066_o21.g1 PHD_FILE: MSMg01no066_o21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCGTAGTAGG
CGGAATTCCTCCCTGTTACCCATAACATTCCCAGTCCTTTGTCACTGTTT
GCTCAATAAACTTATGATCTCTCGGCAAGACAGGAAGAAAAGGACAAACA
GGAGATTCAGGAAAGAACAAAGCACGTTTAATGCCCAGTCTGATAAGGCC
AAGAAAAGAATGTTGACTCTGTGATCATCATGACCTTCAAGAGTGAAGAG
ATGATGTCAGAAAAGACTGAAGTATACCAGGAAGGGAGGGCTAGAGAGAT
GTCTCAGTGGTTAAGAACGTTACTTATTTTGCACAGGGCCTGGGTTTGAT
TCCCAACTCCCACTATGAGGTAACAATCTTTAACTTCAGTTCCAGTGAAT
CCAATGCCTTGACTTTTGTGGATATCAAGCGTGGACATGGTGCACAAACG
TACACATAGTCTAAACCCTCATAAAATAAAATGTGATATATATATACGCG
TGTGTAGTGTGTGCGTTGATGTTTATATGTGATTCATATTTATTATAAAT
TATTCATAATATTCTAATATTTTTCATTCTATTATATATTAATATATATA
ATTTATTAATACTATAATTTGAATTTAGTATTATTATCTTTATTCTACTC
CTTTATCCATCTTTTTCCTTTTCTTCTTTTAATCTGATTTTCTACCTCCT
TTCCTACCTCTTCCTCTACA
NNNNNCCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCACGTTGAGTTGAAGCTAG
ATGAACTGTGGTCCTCAGTTTGCTCCACCCAGGATTGGCAGTTGGTGTAC
TGGGAGCCTTGGGCTTCTGATATTTTCAGGACATCCTTTGAAAGGATGAC
AGTCTCACCTTATAAACAAGGGTCGAGATCAGAGAGGTCAAATGGTTACG
TGGGGGACCAGTGGCAATGTCAGAATGTGGATTCAGATGATGCTAGAATG
GAAGGCTTTGAGCTTAAGTGGATAGAGTAGCCATCTCTTTTTAATGCCAG
CTCCTCATGAGACTGAGGTAGATGGACCTGAGTTTGAAGCATTCCTGGGA
TACTTATTCTTATTTGATGGGGGAAAAGCTGCTGTCGATATCTAGATGCT
ATGGCTAGCAAGTGTTATCTCCCTACTATCAAGTGATTAATATCAATTAA
AGAAAACTCTTCCTTCTGCACTCTGGTTACACAATTATTGCGAGATATAT
AGTAATTATCCATTCGTATCTTCTTACTTACAATAAAATTTCAAATGTAT
CTGCCTGCTCACGCCTGGGTATCTCAAAAAATCAGGGATATACCCCAACC
TACGTAAAGATTTTTAGGTTCTCCTGTAACCTTTGGTTATAAAAAACCAA
ACTGATATGTAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_o21.b1 MSMg01no066_o21.b1 CHROMAT_FILE:
MSMg01no066_o21.b1 PHD_FILE: MSMg01no066_o21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:53 2005
         (204 letters)



>mm_chr8_113620057_113620660
          Length = 604

 Score =  379 bits (196), Expect = e-110
 Identities = 202/204 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccagtcctttgtcactgtttgctcaataaacttatgatctctcggcaagacaggaagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ccagtcctttgtcactgtttgctcaataaacttatgatctctcggcaagacaggaagaaa 345

                                                                       
Query: 61  aggacaaacaggagattcaggaaagaacaaagcacgtttaatgcccagtctgataaggcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 aggacaaacaggagattcaggaaagaacaaagcacgtttaatgcccagtctgataaggcc 285

                                                                       
Query: 121 aagaaaagaatgttgactctgtgatcatcatgaccttcaagagtgaagagatgatgtcag 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 284 aagaaaagaatgttgactctgtgatcatcatgaccttcaagagtgaagagatgagggcag 225

                                   
Query: 181 aaaagactgaagtataccaggaag 204
           ||||||||||||||||||||||||
Sbjct: 224 aaaagactgaagtataccaggaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 604
Length adjustment: 8
Effective length of query: 196
Effective length of database: 596
Effective search space:   116816
Effective search space used:   116816
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)