Query= MSMg01no066_p09.b1 MSMg01no066_p09.b1 CHROMAT_FILE:
MSMg01no066_p09.b1 PHD_FILE: MSMg01no066_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:56 2005
(522 letters)
>mm_chr8_110672825_110673748
Length = 924
Score = 959 bits (496), Expect = 0.0
Identities = 513/520 (98%), Gaps = 6/520 (1%)
Strand = Plus / Minus
Query: 7 gaattccagcatattcttctattttttatgatgttctttttttttttttttaagtgggga 66
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 724 gaattccagcatattctt-tattttttatgatgttc-ttttttttttttttaagtgggga 667
Query: 67 aagctgggaactagtttcctcaacagagctatcctcctgccccagctctccacccaactc 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 aagctgggaactagtttcctcaacagagctatcctcctgccccagctctccacccaactc 607
Query: 127 taaaagatttaagacaaaacctaaagagacaggtgtgatggagtctcactccgtttgcat 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 taaaagatttaagacaaaacctaaagagacaggtgtgatggagtctcactccgtttgcat 547
Query: 187 aaaggcaactgtccactcccagccccggccccccaaaagaaagacaagcatgaggaggta 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 aaaggcaactgtccactcccagccccggccccccaaaagaaagacaagcatgaggaggta 487
Query: 247 ggagaatttgggacccccctctctaccaccgccccatatttaggacgtgccattttctct 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ggagaatttgggacccccctctctaccaccgccccatatttaggacgtgccattttctct 427
Query: 307 taaatattcaggaactatttcccagggaaaaagaaagcatcgggaaggggctccttgaag 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 taaatattcaggaactatttcccagggaaaaagaaagcatcgggaaggggctccttgaag 367
Query: 367 gtgagcacgtgaggcgaagaggaactgagctgtgaagaggtgagagcacttac---ggag 423
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 366 gtgagcacgtgaggcgaagaggaactgagctgtgaagaggtgagagcacttacggaggag 307
Query: 424 gaacggaggaggaacg-aacgggagaagtgaggagaaaggagaaaaaccacgggaggagg 482
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gaacggaggaggaacgaaaggggagaagtgaggagaaaggagaaaaaccacgggaggagg 247
Query: 483 catggcctgcactcatttgtaataaggatatcactcaggt 522
||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 catggcctgcactcatttgtaataaggatatcactcaggt 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 924
Length adjustment: 10
Effective length of query: 512
Effective length of database: 914
Effective search space: 467968
Effective search space used: 467968
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no066_p09.g1 MSMg01no066_p09.g1 CHROMAT_FILE:
MSMg01no066_p09.g1 PHD_FILE: MSMg01no066_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:56 2005
(560 letters)
>mm_chr8_110563322_110564281
Length = 960
Score = 1021 bits (528), Expect = 0.0
Identities = 552/562 (98%), Gaps = 5/562 (0%)
Strand = Plus / Plus
Query: 1 tttaggcctccattttcttacttatagactggtgatgatgtggcgttaagagacatcctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 tttaggcctccattttcttacttatagactggtgatgatgtggcgttaagagatatcctt 260
Query: 61 aagagacaaagtacagtatactaagggctccatggtatagctgcttaccaattgtcagtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagagacaaagtacagtatactaagggctccatggtatagctgcttaccaattgtcagtc 320
Query: 121 ttcattatcattcacagggatgctgtctacgagcagaaacaaatacagatagttgtgcta 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcattattattcacagggatgctgtctacgagcagaaacaaatacagatagttgtgcta 380
Query: 181 catagaggtaactcagttttgccaggaagcccattggtgcggagagtgtcaaggaacagg 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catagaggtaactcagctttgccaggaagcccattggtgcggagagtgtcaaggaacagg 440
Query: 241 gatcctgcacatagcaggaaggacagttgtgacagaggttctagagagatgatggctcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 gatcctgcacatagcaggaaggacagttgtgacagaggttctagagagatg---gctcag 497
Query: 301 cagttaagagtgcatactgctcttgcagagaacctttgttgagttcccggttcccacatc 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 498 cagttaagagtgcatactgctcttgcagagaacctttgttgagttcctggttcccacatc 557
Query: 361 tgctcaccatctcctgtaactccagctgctgaagacccgatgctgccttctagcctctgg 420
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 558 tgctcaccatctcctgtaactccagctgctgaagacccgatgccgccttctagcctctgg 617
Query: 421 tagccaatgtgctcacaaattatcacatgggatacatgtgatacaaaccctcccagataa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tagccaatgtgctcacaaattatcacatgggatacatgtgatacaaaccctcccagataa 677
Query: 481 acgcgcttacctataatttaaaaaaaaaa--caaagtcaagtcttaaaaaaagcaaccca 538
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 678 acgcgcttacctataatttaaaaaaaaaaaacaaagtcaagtcttaaaaaaagcaaccca 737
Query: 539 ttgcagccccgttgcagcggtt 560
||||||||||||||||||||||
Sbjct: 738 ttgcagccccgttgcagcggtt 759
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
