BAC Information

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BAC

Clone NameMSMg01-067E19
Chromosome8 (Build37)
Map Location 92,067,592 - 92,067,877
singlet/doubletsinglet
Overlap genenone
Upstream geneNkd1, 9130017C17Rik, Nod2, Cyld, LOC675985, Sall1, LOC100041089, EG625801, EG384862
Downstream geneTox3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067E19.T7 (MSMg01no067_e19.b1)MSMg01-067E19.TJ (MSMg01no067_e19.g1)
ACCAG292068AG292069
length849706
length of high quality
(start - end)
---286 (73 - 358)
definitionCHROMAT_FILE: MSMg01no067_e19.b1 PHD_FILE: MSMg01no067_e19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:22 2005CHROMAT_FILE: MSMg01no067_e19.g1 PHD_FILE: MSMg01no067_e19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GNTAATTCAATGGTTTGTTACTCCCAATAATAAAAAAGTTCATATATTAT
GTATGGCAGGTTATATTGGTGTTTCCCATTATATGCCATAATCATCACCG
TGTCATTTTGATCTATTGATCCATGGTTATGATGCTGTATATTAATTATA
TGTATTTGGTACTCTTGTCTTTTTAGTCTCTATGATACTTCTTTGTTTAC
ACTTATCTTTATTTGTTTTTTCTTAATGTATTGTATTCTTTTTTTAAACT
GAGACTGAGTCAACTTTTCTTCTTTTGTCTTTTTGTTCCCCTCCACTCTC
TATTTTATTGTTGATTTTATTTTTTATACGAATTTGTTATATATAACTTT
TATTCTTTTTTTTTGTCGTTCTCTTCTCTCATTCTTATTTTTATTTTTTA
TTTGTTGTATTTATATTTCTTTTTTTTTTTTAATTTTGTTTTTTCGATAT
TTCTTTTTTTCTATTATATATATTAATTTATTTTTCCTATTTTCTTTATA
ATTTCTTATTTGTTTATTTTTTTTATTTATTTCTTTTATTTCTTCTATTC
CCTTATATTATTATTATTGATCTCATCCTTTTTTTTTCTCCTCTTGCCCA
TATTCTCCATTACGATAACATATTATCATCATTGATTTTTGACTTTTATT
TTTTCTATGTGTTTTATTTTTATCTTATCGTCTCCGAAATGTTTCTTTTT
TATTATTCTCTTTCTGCTTTCATTTCCTCTATCTTGCCACACATATATAT
TTTATTNTCGTGTCTTCTTTCTCTGTNCACCTGATTTTCCTCTTGCTTT
AATGAAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTCCAAGCAATCCTTCCATCCCCTCCC
TCCCTCCCTCCAAGCTTGAACACTCATCTTTTAAAACACCATGTAAAGGT
GTTCTGAACAGAAGGCTCTTGGCACTGATTTAATTACAGGCTGACAACGA
AGGTGGCTTCTCACAAAGGTGCCATCAGACACCACAGAGCGAGGTGCTGA
GCCACAGCGGGGAAGGATTCTTCTGTTGATGTAAAATCCCATCACAATAT
TTGAGAAGTTTGGTTTTGATATATGCTTCAGGAAACCAGAGAACACTTTT
TGTTTTGTTATATTCTGGCTCGCCTCGCCCCCGTGAGGTTGGCTTACCTT
CTGGACATGGGGACTCATCATTTTAAAAAATGACATGGGCGTTGTTCCCA
TAAATAATGCTAGGAGCTGGGGATGAAGAAGGGGGTCATTTGATAACTAT
AAAAATTCTCTGTCTCAGAAACTTTCAAAAATACTGTGCATTGAAATGTT
TCCGTATTTTGGGGAATCCATGACTGATGTCAATGGAACAGGGAAAAATA
GTCCAAATTCACGCCGTAAATGAAAAGACATTTTATACCGGGTTGCCCAG
CTTGGCTGTCCAGTAGAACTGAACTAAGGAACTTCTGGAAGTCCTGGGGG
CCAGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_e19.g1 MSMg01no067_e19.g1 CHROMAT_FILE:
MSMg01no067_e19.g1 PHD_FILE: MSMg01no067_e19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:22 2005
         (286 letters)



>mm_chr8_92067392_92068077
          Length = 686

 Score =  538 bits (278), Expect = e-157
 Identities = 284/286 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttccaagcaatccttccatcccctccctccctccctccaagcttgaacactcatctttt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 486 cttccaagcaatccttccatcccctccctccctccctccaagcttgaacaatcatctttt 427

                                                                       
Query: 61  aaaacaccatgtaaaggtgttctgaacagaaggctcttggcactgatttaattacaggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aaaacaccatgtaaaggtgttctgaacagaaggctcttggcactgatttaattacaggct 367

                                                                       
Query: 121 gacaacgaaggtggcttctcacaaaggtgccatcagacaccacagagcgaggtgctgagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gacaacgaaggtggcttctcacaaaggtgccatcagacaccacagagcgaggtgctgagc 307

                                                                       
Query: 181 cacagcggggaaggattcttctgttgatgtaaaatcccatcacaatatttgagaagtttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 cacagcggggaaggattcttctgttgatgtaaaatcccatcacaatatttgagaagtttg 247

                                                         
Query: 241 gttttgatatatgcttcaggaaaccagagaacactttttgttttgt 286
           ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 246 gttttgatataggcttcaggaaaccagagaacactttttgttttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)