BAC Information

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BAC

Clone NameMSMg01-067M21
Chromosome8 (Build37)
Map Location 116,711,917 - 116,712,207
singlet/doubletsinglet
Overlap genenone
Upstream geneMon1b, 4930481F22Rik, Adamts18, Nudt7
Downstream geneAI427515, Clec3a, Wwox
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067M21.T7 (MSMg01no067_m21.b1)MSMg01-067M21.TJ (MSMg01no067_m21.g1)
ACCAG292451AG292452
length690690
length of high quality
(start - end)
318 (48 - 365)291 (74 - 364)
definitionCHROMAT_FILE: MSMg01no067_m21.b1 PHD_FILE: MSMg01no067_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:01 2005CHROMAT_FILE: MSMg01no067_m21.g1 PHD_FILE: MSMg01no067_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTGAAAGGTGAGCACTGAAACCATGTATCTGCACAGACATAGAC
ATACATGAGCATAGACACACATCAATTAACCTACCAATTTATTTATTTAT
TTACTTATTTATTTATTTAATATTTTTATTATTACGTATTTTCCTCAATT
ACATTTAGAATGCTATCCCAAAACTCCCCCATACCCCCCCCCCACTTCCC
TACCCACCCATTCCCATTTTTTGGCCCTGGCATTCCCCTGTACTGGGGCA
TATAAAGTTTGCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTA
GGCCATCTTTTGATATTATGCAGCTAACCACAAGAGCTCCCGGGTACTGG
TTAGTTCATAATGTTGTTCCACCTATAGGGATGCAGTTCCCTTTAGCTCC
TTGGATACTTTCTCTAGCTCCTCCATTGGGGGCGCTGTGCTCCATCCAAT
AGCTGACTGTGAGCATCTACTTATGTGTTTGCTAGGCCCCGGGCTAGTCT
CACAAGAGACAGCTATATCAGGGTCCTTTCAGCAAAATCTTGCTAGTGCA
TGCAATGGTGTCATCGTTTGGAGGCTAATTATGGGATGGATCTCTGGATA
TGGCAGTCTCTAGTAGGTCCATCCTTTTGTCTCACCTCCA
ACGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAATAGTGGGTCTTCCTCCTTCTGAAAG
TTCCAGAGACCTCTCAAAGACCAGACTCATCGTGTAGGAACCTCCTAGTC
TTTGATAATGCAAACCATCGAGGGAGGAGCTCTACTGATGTTTAGATCCA
TGGTTCAGGTACAAGAGGTTTTTCAAGGCTGCGAATCCTGGAGCATGGGG
CTCAATGTCATTAGGAGCTTCCTCCCATGGCCATTTTCTTCTGAAGTCTG
TCAGCCTTCAGAACACAAAGAGCCCGGTGAGGTCTCCAGTCATTCATGGA
ATCCAGGAGCCTTTTTTGTATTTGCCCTCCCTCCAAATCCCAGAAATGTT
CTCAGTGCCCATCCCTGAGCTGACTGATAGAGTCTATTCTCCAGTCCCTG
GCATTCCAACCTGAGAAGCCTTCCTTCCCTAGGGAACATTTTCCACCACA
ATGCAAAAGTATCCAGGCCAACGATCATAAATTCACAGCCCACTGGGTGT
GATTTATTCTCCCTTAATATGATAATTGCGTTAGTTGTCAAGAGTTAATG
ACTAAGTCAGAATAAACTGTGGCACGTGCACAGTTGCGTTACTAGGCAGC
GACCAAAGAAATAATAGGAGTCCCTGTGTGATGAGCAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_m21.g1 MSMg01no067_m21.g1 CHROMAT_FILE:
MSMg01no067_m21.g1 PHD_FILE: MSMg01no067_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:01 2005
         (291 letters)



>mm_chr8_116711717_116712407
          Length = 691

 Score =  524 bits (271), Expect = e-153
 Identities = 286/291 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatagtgggtcttcctccttctgaaagttccagagacctctcaaagaccagactcatcgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatagtgggtcttcctccttctgaaagttccagagacctctcaaagaccagactcatcgt 260

                                                                       
Query: 61  gtaggaacctcctagtctttgataatgcaaaccatcgagggaggagctctactgatgttt 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaggaacctcctagtctttgatattgcaaaccatcgagggaggagctctactgatgttt 320

                                                                       
Query: 121 agatccatggttcaggtacaagaggtttttcaaggctgcgaatcctggagcatggggctc 180
           |||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 321 agatccatggctcaggtacaagaggtttttcaaagctgagaatcctggagcatggggctc 380

                                                                       
Query: 181 aatgtcattaggagcttcctcccatggccattttcttctgaagtctgtcagccttcagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 aatgtcattaggagcttcctcccatggccattttcttctgaagtctgtcagccctcagaa 440

                                                              
Query: 241 cacaaagagcccggtgaggtctccagtcattcatggaatccaggagccttt 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacaaagagcccggtgaggtctccagtcattcatggaatccaggagccttt 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)