BAC Information

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BAC

Clone NameMSMg01-067N08
Chromosome8 (Build37)
Map Location 68,932,841 - 68,933,072
singlet/doubletsinglet
Overlap geneMarch1
Upstream geneLOC100040967, LOC100040986
Downstream gene1810029B16Rik, Tktl2, Npy5r, Npy1r, BC053440, LOC665453
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067N08.T7 (MSMg01no067_n08.b1)MSMg01-067N08.TJ (MSMg01no067_n08.g1)
ACCAG292473AG292474
length701684
length of high quality
(start - end)
232 (116 - 347)278 (74 - 351)
definitionCHROMAT_FILE: MSMg01no067_n08.b1 PHD_FILE: MSMg01no067_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:03 2005CHROMAT_FILE: MSMg01no067_n08.g1 PHD_FILE: MSMg01no067_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGCCGCTAAACGACTCCTATAGGTAGAGGATCCGCGGAATTCTATATGCT
CTATCATTTCACAGTGTCCAGACTCTCAACATTTTCAGCATGTCTTTATA
AGTGTCTCTACTCCAATTGCTATAATCATTGTGTGTGCCTTCTGATTCTA
GGTTCCCCAGCTTTAAGTGTTGCAAAAAGAGCAGGATGCCATAAGCTTAA
AGGAAGGACTTTCCAAGGAGGAGAACTGGTCAACAATGCAGAATCTATCA
GGGAGAAGGGCTGTGGGGGATTTGGGGAGGGAAATAGAAAGTGGCCGTGC
ATCCTTATTCTTAACTAAAAGAGGACTATGAGTATCTTAGAAGAAATGTT
TTTTTATAGCAACTTACCCTGACCTGTTCCTGCCTTCTGACATTACAACT
CATTGACACGACACATGACTCAAAAGAAGACATGGAAAACTGCATTACCT
TGATTTAAAAAAAAAAATCATACGAAAAAAATTGCAGAACCTGCATCATA
GCACCTAACAAAAAATTTCTGCTGCCCCTGACTGATTGTATGCCCACAGT
AGCATGTTTCCTTTGTGGATCCGCCTATATCTTACAATATTTTTCTCAGC
TATTATGGAGCTCCCAACCGTCCTATTACTAATTTTCCCTTCGATGTTAT
CCATTTTCTGAAAAACTTGCTTCCTTACTGCCCACCAATACCTTATCCCT
G
TCGATGAAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGATGTTAGTTTTTGTTTTACCTTATA
ATATTTTATTTCTTATGTTTTGTTTTATTATTATTATTCCTTAGAAGCCT
GTTTTTTTTTTTCTAGTGAGTGTCAGAGAGTAGATCCATATCAGAGGGAA
TGTGTGGAGGAGCTGGGAAGAGCAGAGGGAAGGGAAACCATAATTAAAAA
ATATTCTGTGAGGAGAAAGTATTTTTAATAAGATTAAAAAAGGGTAGAAA
CATCTGTCTGTTTGGCCTGTGAATAATTTCTATGAAAAAATCATTTTTGG
TGGACAAGTGTTGTTTACCCCCCCCCCGCTCCCTTTTCATATCAGGACCT
TCTCCTCCAAATGATGGGATGCAAGGGCCACAGAAGCACATTTTGTGACT
TAGGGCAACCAGCTTAGGCATAACAGGTTAGCTTGCATGAGGTTTAATAT
AACCCGGAGAACGGTTAGAGTTTCCTAACTGTGAACATTTGCCGCTAGCC
TGTGTGATGTCTAGCTTTTTTTCAACTTTTATCAATCTATAAGCCCTGAT
TATGAGGACACCTCTATTTTTTTTCCCTTTTTCTCCTTTTTTTTGGTGGT
GGTATTTGTCTTTCCACTCTTTCTCTTTTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_n08.b1 MSMg01no067_n08.b1 CHROMAT_FILE:
MSMg01no067_n08.b1 PHD_FILE: MSMg01no067_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:03 2005
         (232 letters)



>mm_chr8_68932641_68933272
          Length = 632

 Score =  402 bits (208), Expect = e-117
 Identities = 226/232 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgctataatcattgtgtgtgccttctgattctaggttccccagctttaagtgttgcaa 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 attgctataatcattgtgtgtgccttctgattccaggttccccagctttaagtgttgcaa 260

                                                                       
Query: 61  aaagagcaggatgccataagcttaaaggaaggactttccaaggaggagaactggtcaaca 120
           |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 261 aaagagcaggatgccataagctaaaaagaaggactttccaaggaggagaactggtcaaca 320

                                                                       
Query: 121 atgcagaatctatcagggagaagggctgtgggggatttggggagggaaatagaaagtggc 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgcagaatatatcagggagaagggctgtgggggatttggggagggaaatagaaagtggc 380

                                                               
Query: 181 cgtgcatccttattcttaactaaaagaggactatgagtatcttagaagaaat 232
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgtgcatccttaagcttaactaaaagaggactatgagtatcttagaagaaat 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)