BAC Information

Click to search

BAC

Clone NameMSMg01-068A12
Chromosome8 (Build37)
Map Location 96,432,357 - 96,432,605
singlet/doubletsinglet
Overlap geneGnao1
Upstream geneAytl1, LOC100040752, Slc6a2, EG244595, LOC382044, Es1, LOC676523, Ces3, Es22, AU018778, Ces1, 2310039D24Rik, Ces7
Downstream geneAmfr, Nudt21, Ogfod1, Bbs2, Mt4, Mt3, Mt2, Mt1, Nup93, LOC100041555, Slc12a3, Herpud1, EG434339, AI451557, Cpne2, 2310065K24Rik, Rspry1, Arl2bp, Pllp, Ccl22, Cx3cl1, 1700121C10Rik, Ccl17, Ciapin1, LOC664947, Coq9, Polr2c, Dok4, LOC100040942, Ccdc102a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068A12.T7 (MSMg01no068_a12.b1)MSMg01-068A12.TJ (MSMg01no068_a12.g1)
ACCAG292622AG292623
length793779
length of high quality
(start - end)
249 (137 - 385)167 (138 - 304)
definitionCHROMAT_FILE: MSMg01no068_a12.b1 PHD_FILE: MSMg01no068_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:19 2005CHROMAT_FILE: MSMg01no068_a12.g1 PHD_FILE: MSMg01no068_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCCCCCNCTCTTTNTCCCCCCCTTTTTTTTTTTTTCCTTTTCCTTTT
TGTTGCTTNTCTTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTC
AGAGAATGGCGGAATTCAGCACTGTTCTCCTTTCGGACTCTGCCCTGGGG
ACCTCAGGCTAGAGATCTTGGGGGAGGGGACTTTGTCTGTGCAAATGATC
CTAGTCTACATGTCCTCAGGAATCCATGGTTGCTTCAGGGCTGCTGAGGA
AGGGAAGAGCTGGGGCTGCTATCACACGGGCTCAGTGACTCAGCCTGCTG
TGTGGGCCAGGAAGGGTCTGTGGGTCCCCTTGCCACTGTAGCATTTGCTG
GAGAATTAGTGTTGCAAAAACTGACTTTTGGTTATTAATCGCGAATATGT
GATCTTTCCTGACTTATAGATGATGGTACCGAGTCCAGCGGTGGGGCTGA
GTCAAGTTGGTACTGTGGAAAGGAGGCAGCAGCATTTTGGTTGCATATCC
TGGAAGTGGCTTCTCCTGAGATGTCCAGTGTTGGGAAGACAGGGTCTGCG
GTCACCAGGGTCTCTATCTGTTCCCCATATGACTCTTCAGGGTTCAGCAT
CCTTTTCCAGGGATGTACTGGCGTCATGTAGTACGATATTCAGACCTTGT
ATCGAGGTCATCTCTCTTTTTTGGCGCTGATTAGCATCTCCTTCTTCAGT
ACGCAAAGATGGTCATTGGATTAACTTGTCTCCGTGGTTTTTCTTTCCGC
TAGACACCCTTTATTTGTCCTCCCTTTAGCTTTGTCTATTGGC
TTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTGNNCTTTT
ATATATTTTTTTACTATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGAAATTCATAG
GCAAATGGATGAAACTAGAAAATATCATCCTGAATGAGGTAACCCAGTCA
CAAAAGAACACACATGATATGTACTCACTGATAAGTGGCTATTATCCCAG
AAGCTCAGAATACCCAAGATACAATTCACAGACCAAATGACACTCAAGAA
GAAGGAAGATCAAAGTATGGATACTTCGGTCCTTCTTAGAAGGGGGAACA
AAATACCCATGGGAGAAGATGCTCAGACAAAGTGTGTAGCATAGACTGAA
GGAAAGACCATCCATAGACTGTCCCATCTGGTAATCCATCCCACATACAG
TCAACAAACCCAGACACTATTGTGTATGTCAACAAGTGATTGTTGACAGG
AGTCTGATATATCTATCTCTTGAGAGGCTCTGACAGTGTCTGACAAATAC
AGAGATGAATGCTCTCAGCCAACCATTGGACTGAGCACAGGGTCCCCATT
GGATAATCTAGAGAAAGGACCCAAGGTATTTGAATATACTTGTTACCCCA
AATGGAGGAGCATTTATATTGATTCAACCAGTACCTGCTAGAGGTCCCCT
GTTATCTAATCCATCAATTTAAAGCTTTAAACTTAGGAATGAAACCCTAG
TCCTCCCAGATTGTATTATGATATACAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_a12.b1 MSMg01no068_a12.b1 CHROMAT_FILE:
MSMg01no068_a12.b1 PHD_FILE: MSMg01no068_a12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:19 2005
         (249 letters)



>mm_chr8_96432157_96432805
          Length = 649

 Score =  466 bits (241), Expect = e-136
 Identities = 247/249 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctgccctggggacctcaggctagagatcttgggggaggggactttgtctgtgcaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 actctgccctggggacctcaggctagagatcttgggggaggggactttgtctgtgcaaat 390

                                                                       
Query: 61  gatcctagtctacatgtcctcaggaatccatggttgcttcagggctgctgaggaagggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gatcctagtctacatgtcctcaggaatccatggttgcttcagggctgctgaggaagggaa 330

                                                                       
Query: 121 gagctggggctgctatcacacgggctcagtgactcagcctgctgtgtgggccaggaaggg 180
           ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 329 gagctggggctgctagcacacgggctcagtgacacagcctgctgtgtgggccaggaaggg 270

                                                                       
Query: 181 tctgtgggtccccttgccactgtagcatttgctggagaattagtgttgcaaaaactgact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tctgtgggtccccttgccactgtagcatttgctggagaattagtgttgcaaaaactgact 210

                    
Query: 241 tttggttat 249
           |||||||||
Sbjct: 209 tttggttat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)