BAC Information

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BAC

Clone NameMSMg01-068I02
Chromosome8 (Build37)
Map Location 65,922,074 - 65,922,365
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384830, LOC100040804, LOC665267, Spock3
Downstream geneLOC384831, EG244495, Tll1, LOC100040989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068I02.T7 (MSMg01no068_i02.b1)MSMg01-068I02.TJ (MSMg01no068_i02.g1)
ACCAG292984AG292985
length679698
length of high quality
(start - end)
432 (46 - 477)289 (76 - 364)
definitionCHROMAT_FILE: MSMg01no068_i02.b1 PHD_FILE: MSMg01no068_i02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:57 2005CHROMAT_FILE: MSMg01no068_i02.g1 PHD_FILE: MSMg01no068_i02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCCAGCTTCTCACCATTTACTTTGATGTTGGCTACTGATTTGCT
GTAGATTGTTTTTATCATGTTTAGGTATGGGCCTTGAATTCCTGATCTTT
CTAAGACTTTAATCATGAATGGGTGTTGGATTTTGTCAAATGCTTTCTCA
GCATCTAATGAAATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATA
GTGGATTACATTGTGGATTTCCGTATAGTAAACCATCCCTGCATCTATGG
AATGAAACCTATTTGGTCAGGATGGATGATTGTTTTGATGTGTTCTTGGA
TTCAATTATCGAGAATTTTATTGAGTATTTTTGCATCCATACTCATAAGG
GAAATTGGTTTGAAGTTCTCTATCTTTGTTGGGTCTTCCTGTGATTTAGC
TATCAGAGTAATTGTTGCTTCATAGAATGGATTGGGTAGAGTACCTTCTG
CTTCTATTTTGTGGAATGGATTGTGAAGAACTGGAATTACCTCTTTGAAG
GTCTGATATAACTCTGCATTAAACCCATCTGGTTCTGGGCTTTTTTTTTT
TTGGTTGTGAGACTATTAATGATTGCTTTCTATTCCTTTATTGTAAATAC
GACCGTTTACATTCCTAACCCGATCCCGA
CAATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTATTGACTCAGCACTCTGAGGTC
ATAAAGAATCCGAGAACCAATCATAATATGTTGGCTTAATGTTTAGTATT
TTGTGTTGATGTTATATGAACCAACCATGCCAACTAACACACACATGCAT
GCATGTGCATTTACACACACACACACACACACACACACACACACACAATC
TAAAGCTTTCTCAGAGGAAATATACTGTACATCTGACCTGTACAGCGGGC
CCAGTTATTCGTTGGTCTCCAGGGGACTCTTGAAACCAAATGGGGGGATG
AGAGAGAAACGGAGCCAAGCACAGAAAAGACATGGAGTCAATCTGAATCT
TGTCAAGGTCTCATTGTGTTCAGCAAAACTTAAAATTTTTATACACAAAG
ATCAAAGGGAAAACAACCCTTACGCATAAGGGCAGGGGAGGGTACTGGTA
ATTTTCCTTGGTGACTACAATGATATCTAAAAGTATATCTTGTGGTTATG
ACATCTGCTGTTTACGTCAGTCACGTCTGGCGTCATCCTGTGGTAATTGT
TGGTGACCTTCATCTGGACTTACTCAGCTTGAGCAGGGGTCCCATCTGGT
AATAGCCCATTGGTGACTCTTGTCCGGACTTACTCACCTTGTTTACGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_i02.g1 MSMg01no068_i02.g1 CHROMAT_FILE:
MSMg01no068_i02.g1 PHD_FILE: MSMg01no068_i02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:57 2005
         (289 letters)



>mm_chr8_65922032_65922717
          Length = 686

 Score =  480 bits (248), Expect = e-140
 Identities = 281/296 (94%), Gaps = 11/296 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   attattgactcagcactctgaggtcataaagaatccgagaaccaatcataatatgttggc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 334 attattgactcagcactctgaggtcataaagaatccgagaaccaatcataatgtgttggc 275

                                                                       
Query: 61  ttaatgtttagtattttgtgttgatgttatatgaaccaaccatgccaactaacacacaca 120
           ||||||||||||| |||||||||||||||||||||||||||| ||||||||  |||||||
Sbjct: 274 ttaatgtttagta-tttgtgttgatgttatatgaaccaaccacgccaacta--acacaca 218

                                                                       
Query: 121 tgcatgcatgtgcattt------acacacacacacacacacacacacacacacacacaat 174
           |||||||||||| ||||      |||||||||||||||||||||||||||||||||||||
Sbjct: 217 tgcatgcatgtgtatttacacacacacacacacacacacacacacacacacacacacaat 158

                                                                       
Query: 175 ctaaagct-ttctcagaggaaatatactgtacatctgacctgtacagcgggcccagttat 233
           |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 ctaaagttattctcagaggaaatatactgtacatctgacctgtacagcgggcccagttat 98

                                                                   
Query: 234 tcgttggtctccaggggactcttgaaaccaaatggggggatgagagagaaacggag 289
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 97  tcgttggtctccaggggactcttgaaaccaaat-gggggatgagagagaaacggag 43


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 686
Length adjustment: 9
Effective length of query: 280
Effective length of database: 677
Effective search space:   189560
Effective search space used:   189560
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)