BAC Information

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BAC

Clone NameMSMg01-068L24
Chromosome8 (Build37)
Map Location 58,009,514 - 58,009,808
singlet/doubletsinglet
Overlap genenone
Upstream geneGm392, LOC100040212, Gm1153, EG664808, EG664818, EG664834, EG664859
Downstream geneEG664876, LOC100040356, LOC664916, Adam29, Glra3, LOC664812, Hpgd, LOC664948
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068L24.T7 (MSMg01no068_l24.b1)MSMg01-068L24.TJ (MSMg01no068_l24.g1)
ACCAG293171AG293172
length755733
length of high quality
(start - end)
323 (45 - 367)295 (75 - 369)
definitionCHROMAT_FILE: MSMg01no068_l24.b1 PHD_FILE: MSMg01no068_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:17 2005CHROMAT_FILE: MSMg01no068_l24.g1 PHD_FILE: MSMg01no068_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTCTCATTGGACCTTTGCCTGCTTCTCTGGCTCATGCCTGTCTCA
CTTTTTCTCACTATCAATGTTTTATCTCTCTTTTCTGTCTCTCCTTTACA
CACTATGTGTGATTACCCAATACTCACTTTACAATTAGTGGGTATACTGC
TGGTTTTCTCCTTGGCTTTTGCTGACACCAACATGTGACCTTGCTTGCAT
CCCTAGGACCCTCTAAAGCATACTTTAATTTTAAGTGCCAATCCATCTGA
GCTCTTACCCTAATGAGAGACAATGTCTGTTAACTTTGGATCAGTTTTGT
TCTCAATCCTATAGGCTATTTATTTCTCTCCCTCCCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAATAAAAAAAAATATCTT
TGGGGGTGGCGTTTTTTCCACGTAATCCCGTTCACTTCCATTTCTCTCAA
ACTACACATATTATTATTTTTACTCCTCTTTCATCTCGAATATTACTAAC
TTTCTCCTCACACATAATTGACTTTTCTCTCATTTAATTCATCTAATGCT
TACCACACTACTCTTTGCTACCTACTTTCTACCAATACTTTCGACCCTTT
CTTCTCTTATTTTTGATCTCTTAATCCCTTATGTACTGTGAATTACTTGC
CTATCTTCCTTTTTTGCTTTTACTCCTTTTTACTTTTTTATTTCCTTATC
CTCTT
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTGAAACTGTATGTCCGTAGCCATT
TACTGAATGTTGGCATCCATCTTTCGTGCATGTATTGAAGGTCAGACAAG
AGGTCGGGTGCATCCATGTGGAACCAGTTATTTTACCTGTTGCTGAGGAA
TAGAATGCTGGAGAGCAGAACTGTTTTTCACTCAAGCATGCAGAATGATA
AAGGGATTGCAAACCTTTCTTTGTTCTCCAATATCACTTGTCTGTTATAT
TTCATTCCTAATATTTTTTATTTATTTATTAACTTTATATTCCAATATCA
GCCCCCTCTCCTCAGAATCTCCCTTCACACACATCCTAACCCCATTATCC
CTCCACTCCTCTGAAGTGATGGACATTACAAACACACACACACACACACA
CACACACGCGCTCACACACACACACACACACACACACACACACACACACC
CCACATCAAGTTTATTGCAGGACTGGCAACATTCTCTCCCCATGAAGCCA
GACAAGGCAGCTCAGTTAGGGGAAAATGTTTCACATGTAGACAACAGGTC
TGAGACAGTACAATTCTCCATTTATTGGGGGACTTGCATAAAGTCCAAGC
TGCACATCTGCTACATATTTCCTAGAGGACTAAGTCCAGCCCATATATTG
TCCTTTGGTTGCTGTTTCAGAGTCTGGGATCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_l24.g1 MSMg01no068_l24.g1 CHROMAT_FILE:
MSMg01no068_l24.g1 PHD_FILE: MSMg01no068_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:17 2005
         (295 letters)



>mm_chr8_58009314_58010008
          Length = 695

 Score =  555 bits (287), Expect = e-162
 Identities = 293/295 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgaaactgtatgtccgtagccatttactgaatgttggcatccatctttcgtgcatgta 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 attgaaactgtatgtccgtagccatttactgaatgttggcatccatctttcgtgaatgta 260

                                                                       
Query: 61  ttgaaggtcagacaagaggtcgggtgcatccatgtggaaccagttattttacctgttgct 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 ttgaaggtcagacaagaggtcgggtgcatccatgtggatccagttattttacctgttgct 320

                                                                       
Query: 121 gaggaatagaatgctggagagcagaactgtttttcactcaagcatgcagaatgataaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaggaatagaatgctggagagcagaactgtttttcactcaagcatgcagaatgataaagg 380

                                                                       
Query: 181 gattgcaaacctttctttgttctccaatatcacttgtctgttatatttcattcctaatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gattgcaaacctttctttgttctccaatatcacttgtctgttatatttcattcctaatat 440

                                                                  
Query: 241 tttttatttatttattaactttatattccaatatcagccccctctcctcagaatc 295
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttttatttatttattaactttatattccaatatcagccccctctcctcagaatc 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)