BAC Information

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BAC

Clone NameMSMg01-068O18
Chromosome8 (Build37)
Map Location 48,249,064 - 48,249,470
singlet/doubletsinglet
Overlap genenone
Upstream gene4933411K20Rik, Slc25a4, LOC621269, LOC100039875, LOC667325, Helt, LOC667337, Acsl1, Mlf1ip, Ccdc111, Casp3, Irf2, Enpp6
Downstream geneStox2, 4930448N21Rik, D030016E14Rik, Rwdd4a, LOC384819, LOC667422, Ing2, LOC546058, Cdkn2aip, LOC100039801, Cldn22, Wwc2, LOC100040113, Dctd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068O18.T7 (MSMg01no068_o18.b1)MSMg01-068O18.TJ (MSMg01no068_o18.g1)
ACCAG293303AG293304
length1,223734
length of high quality
(start - end)
---405 (75 - 479)
definitionCHROMAT_FILE: MSMg01no068_o18.b1 PHD_FILE: MSMg01no068_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:31 2005CHROMAT_FILE: MSMg01no068_o18.g1 PHD_FILE: MSMg01no068_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTTTCCCNCCCCCNNNNNCCCCCCCCCCCNCCCCNNNNNCCCNNN
NCCCCCCCNCNCCCCCCNNCCNNNNCCCCCCCCCCCNNCCCCNNNCCCAC
CNNNNCCACCAAAAACACCCNTTTCCCCAAAAAAACCCCCCCACTCCCCC
CTTACNANNNAAACACCCCCCCCCCNNCACTNCCCCNNNCACACCNNACC
CCCNNCCCCAANNNNAAACACCCCCCNCCCNNCNCCCCACCCCACCCCCC
CCCNNCNCNNNNCCCACCCCTTCAACCCCACACCNCCCCCCACCCCCCAC
AANACCATCCCCACCCCCCACNNCCAACCCNNNCCACACACCCCACCCCC
TCCCCCACCCCCNCAACCACACACCAATAGATAGGGGTTGGTTTTGGCGG
GCTAGGGGNNCNNNCCCACTCCCCACACACCCCTCTCAACAATAATAACT
ATATTGTTTAGAGCCTACTNNCCCNNNNCCCCCTACCACCCCATCCCCCT
CACAAACACAATCCACCCAAAAAACNACCCCACTCACTCATCCATATATA
TATAATATCTTTGTGGGGCTTCTTNNNNTCCCCCCCCCTCTAATATCCCT
CTTCCCCNCCCCCCACCCCATACATAACCCNAACACCCACCCAATACACA
CAATACCCCCCCACCCCATCANCNCCTCCCACAAACTCAATACCCATATT
TATTCTATCTACTCCCCTCTCANCCTTACTCCCCCCTCCACCCACTATAC
AACCCTTAAATATACNTANACATAAACCCCCACCCCCCCACTACACCCCA
CATANCCCCACCCCACTAATATAGATAGTGCATATTCGGTATTAACTTAT
ANCACANCCACCACCCCCCAAACCACNCCCAACATTATTCCAATCATCAC
TANCCCCTCTATATATCACAAACATCTCATATCTCATGAGTATCGGGGTC
TCCTTAACCACTATAAATATCTTACCCTCATCACCNCTATATTCACCCAC
ACCACATAACACACTATCCCTACAACTCACTCTATTCCCCACCACATACC
AACTACTTCTTTATATACTTCTCCACTTCACCTTCACTATNACCTCTTAA
CTATATCATAACNACCCTCCACTTCAATCTTTTATATATCATCTCATTAT
CATACCANCCCACTATCAATATTATTAAANACATCCTCCTCTATCTAACC
ATTCTTCATATATGAGTGCTGGG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTGCCCNAATCCTGGTTATAGATATTTTGAGACAAATT
AATTTTTCTTATATTTTTGTTTTGCCCTGAGCAGCCAGAAACAGCATATT
CAAATTTAAAACTGTTTCTACATTTTCATTCTCAAAGGTTCAAACAAAGT
GTGATTTGGTACCCAGTGTTCCAGGGAGGCATTGACTACACAACCCTTTC
CTCCTGTCCGTGTGGCTTGAGCGAAGGTCTCTCTAACTCCCACGAAAATG
CAGCCTCTCATGCAATCTGCTTTTCATTTGAGCCCCGAATGAAACATTGC
AGCCAACTTGACAGTGTTCTTCGCTGTCAGTTACATTCAATTCCCAGGGT
GCAACAGGATTTTCAGTCTTTTTTTTTTTCTACTTCTTCTTCTTTTCTAA
TTTGTCCATAATGAAGAAACTCAAGAGTACTTAAACCGAGGAGAAGCTTT
TTATTTGACATTTTCTTTCACAGTGATGATTGTGCTGCAAGGTGTTTAGC
GTGTACCAGCTTATAAATGCACTTCCTTTGTGAAAAGGTGGGTGTCCAAA
AATATAGAGAGAAATACAGAAATATATTACTATATACAGAGATAGATAGA
TACAGAAAGTTTTATCCTCCTCCAACTGTTCCGGTTTCCCTGATTATTGA
TATAGAAGCCTGCCCCTCTGGAAAAAACTTATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_o18.g1 MSMg01no068_o18.g1 CHROMAT_FILE:
MSMg01no068_o18.g1 PHD_FILE: MSMg01no068_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:31 2005
         (405 letters)



>mm_chr8_48248864_48249670
          Length = 807

 Score =  745 bits (385), Expect = 0.0
 Identities = 401/407 (98%), Gaps = 2/407 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggttatagatattttgagacaaattaatttttcttatatttttgttttgccctgagcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 607 tggttatagatattttgagacaaattaatttttcttatatttttgttttgatctgagcag 548

                                                                       
Query: 61  ccagaaacagcatattcaaatttaaaactgtttctacattttcattctcaaaggttcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ccagaaacagcatattcaaatttaaaactgtttctacattttcattctcaaaggttcaaa 488

                                                                       
Query: 121 caaagtgtgatttggtacccagtgttccagggaggcattgactacacaaccctttcctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 487 caaagtgtgatttggtacccagtgttccagggaggcattgactacacaacccttttctcc 428

                                                                       
Query: 181 tgtccgtgtggcttgagcgaaggtctctctaactcccacgaaaatgcagcctctcatgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tgtccgtgtggcttgagcgaaggtctctctaactcccacgaaaatgcagcctctcatgca 368

                                                                       
Query: 241 atctgcttttcatttgagccccgaatgaaacattgcagccaacttgacagtgttcttcgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 atctgcttttcatttgagccccgaatgaaacattgcagccaacttgacagtgttcttcgc 308

                                                                       
Query: 301 tgtcagttacattcaattcccagggtgcaacaggattttcagtc--tttttttttttcta 358
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| 
Sbjct: 307 tgtcagttacattcaattcccagggtgcaacaggattttcagtctttttttttttttctt 248

                                                          
Query: 359 cttcttcttcttttctaatttgtccataatgaagaaactcaagagta 405
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 cttcttcttcttttctaatttgtccataatgaagaaactcaagagta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 807
Length adjustment: 9
Effective length of query: 396
Effective length of database: 798
Effective search space:   316008
Effective search space used:   316008
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)