BAC Information

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BAC

Clone NameMSMg01-069C08
Chromosome8 (Build37)
Map Location 37,750,104 - 37,750,284
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041572, Gm501, Cldn23, LOC671641, D8Ertd82e, Lonrf1, EG544878, 6430573F11Rik, Dlc1, LOC100042892
Downstream geneA730069N07Rik, AI429214, LOC666877, LOC100041616, 1700016D18Rik, LOC641121, LOC621149, Sgcz
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069C08.T7 (MSMg01no069_c08.b1)MSMg01-069C08.TJ (MSMg01no069_c08.g1)
ACCAG293474AG293475
length696694
length of high quality
(start - end)
182 (76 - 257)---
definitionCHROMAT_FILE: MSMg01no069_c08.b1 PHD_FILE: MSMg01no069_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:49 2005CHROMAT_FILE: MSMg01no069_c08.g1 PHD_FILE: MSMg01no069_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCATCAAAATTTGCGGCGCTATACGACTCCTATTCCGAGAGGACCGCGG
AATTCGCATTCTCCAAAACTAGAATCTCAGGTCTTGAATCTAACAGTGGT
GCATTTGAGGCAGCAATTCTGCTTCCTACAGCCAATGTGCTGCGTGAGCT
TTGGCTGCATGAGGTCCTCGCAGCCCAGACCCACCATTCAGAAATCCATC
AGGTTTCCAAATCAAGGTCCCTTCGGGTCTAGAGGATTCTCCTGACTGAT
CTCTGAGATAATCTGCAATTGGAATGCTATAAATGCTATGACATAGAAAA
CTAACTCATTTTAACTTTTTCGATCTCCTTGAGCAGAGACTTCAGAATAC
ATTTACTTGTTCTTCCCCACCCCCACCCCTTGTAGTTTACTCAGGGTACT
TAGGAGTAATTTCCCATTTGAGATTCAAGCTTTTGCCAATGTTGCCTTTG
GTGTTCATCCTCTTCTAACTATTAGTTCCTGTGCACTCTGGCTTGTGCCG
CTTTGAACGTTCCGATATCGTATCCCTTGCCCACCTTTCCCCTATCCTAT
ACACCTTTTCGATCCCCCTTTTCCCTACTATATCTCTTTTCCGGATCCCA
ATATCTGAGCGCTTTCTATGTATTTCCTATGTCTCCTCAGCCTTTTACGA
TAATTTTTAGATATTATCGTTTTTATACACGATTTACGCTTTTGTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXAGGGATACTTTGATGGCCGATTTATATGCGAGTGCATGCCCT
CATATGTGAGCATGTGTGTCCGTGCGTATATACATCTATACATACATATA
TAACATGACACGTTCTTATGACATGCTCTTATTCTTTCCCATCAGACTCC
ATATGAGCTTAATCGGGTCAGAGCTCACTTTTCTGAGATATAGAATACGC
GTCTATAAACCACCTGATCGCTTACTACACGACATGTCTGCGTCCTCACT
ATTTTCTCATCTTCTAACAGTTCTAAATCTTCATACAGATTTTTTTTTTT
CCCCCCCCCCCCCCCCCATGTGTCCTCTTGCTGTTTCGCAGTTCTTTCCC
TGTCCAAGAAAAAAAAAATACATGCGCGGGGGGGGGCGCTTTATCTTTCC
CCACTCATTCAACCTTACTTCAATACACCCTTTTATATCCTTATAAATCT
ACCTAACACAAAAAACCTAAAATTAATAACCGGTTCTTATCCCCTACATC
CCTTTTCTTTTCCCTCGTTCTAATCCACTACTACTTATCGCCTTCCCTCC
CTAATTTTTTTTAATAAAAATCACCCTAAATATTTTCCCCCAATCCCTTC
GTACCTAGTATAATCAATTTCTTCAAATCTTTTTTATCATATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_c08.b1 MSMg01no069_c08.b1 CHROMAT_FILE:
MSMg01no069_c08.b1 PHD_FILE: MSMg01no069_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:49 2005
         (182 letters)



>mm_chr8_37749904_37750484
          Length = 581

 Score =  344 bits (178), Expect = 2e-99
 Identities = 181/182 (99%), Gaps = 1/182 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcaggtcttgaatctaacagtggtgcatttgaggcagcaattctgcttcctacagccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcaggtcttgaatctaacagtggtgcatttgaggcagcaattctgcttcctacagccaa 322

                                                                       
Query: 61  tgtgctgcgtgagctttggctgcatgaggtcctcgcagcccagacccaccattcagaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgctgcgtgagctttggctgcatgaggtcctcgcagcccagacccaccattcagaaat 262

                                                                       
Query: 121 ccatcaggtttccaaatcaaggtcccttcgggtctagaggattctcctgactgatctctg 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 ccatcaggtttccaaatcaaggtccctt-gggtctagaggattctcctgactgatctctg 203

             
Query: 181 ag 182
           ||
Sbjct: 202 ag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 182
Length of database: 581
Length adjustment: 8
Effective length of query: 174
Effective length of database: 573
Effective search space:    99702
Effective search space used:    99702
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)