BAC Information

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BAC

Clone NameMSMg01-069D04
Chromosome8 (Build37)
Map Location 13,551,675 - 13,634,243
singlet/doubletdoublet
Overlap gene1700029H14Rik, Rasa3
Upstream gene1700094C09Rik, Tubgcp3, Atp11a, LOC100040229, Mcf2l, F7, F10, Proz, Pcid2, Cul4a, Lamp1, Grtp1, Adprhl1, Dcun1d2, Tmco3, Tfdp1, Atp4b, Grk1, Gm687, Gas6, LOC434282
Downstream gene4932443I19Rik, LOC665516, Cdc16, Upf3a, AF366264, D8Ertd457e, 2410022L05Rik, EG665536, Fbxo25, LOC100041103, 2610019F03Rik, EG546036, Erich1, Dlgap2, LOC100041140
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069D04.T7 (MSMg01no069_d04.b1)MSMg01-069D04.TJ (MSMg01no069_d04.g1)
ACCAG293513AG293514
length766755
length of high quality
(start - end)
209 (104 - 312)116 (181 - 296)
definitionCHROMAT_FILE: MSMg01no069_d04.b1 PHD_FILE: MSMg01no069_d04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:53 2005CHROMAT_FILE: MSMg01no069_d04.g1 PHD_FILE: MSMg01no069_d04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,634,040 - 13,634,243)(13,551,675 - 13,551,790)
sequence
CTTCTCCCCCTCCTTTTTTTCCCCTCCCCTCTTCTCCCCTCTCTTTCTTT
GGNCCCACCGTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXTCCGCGGAATTCTTTTTCTCATAAAAGCTGAGTATATGTGCCTGATTG
TATTTGAAGAGGATAAGACTGGTGCTCCCTGACCCAGCCTTGAGTGTAGA
TCTTTGCTGTGACTTACCTGATTGTGTTGCTTGTCAATACCAACATAAAG
TGATATTGAAAGGTGCCAGTGTGTAACTTCATGTTTTGTTGGCTGTTTTT
AGCACTGCTCCAGGGTATACATGAACATATATTTACTCACCTAATAGCTA
ACTGGCACTGATATCACCAATATCCTGCTTAAGTTTACTGGGGTTACAGG
AGTATAGATGATTTTTTATGTACCTGAGCACGAACAACTCAAAGCAGCTG
AGTCAACAAAACCCACCCAAGCGTGGGAGACAATTCTCAAAAGCTATATA
CCTGAATATTTTTGCATTACTGTTTGTTCTACATCTGGGCACAGCCTTTT
TTACGTAGACCTGGCCTATTTAATCATTCTTTGTTTACACTTGTCTTTGC
CCCGCGTTAATTTTCGCTTTTTTTTCTTGTGACTTCTTTGACACTCGCTG
ATTCTTATCATTTCTCCTTGCCCTTTTCTCTCATTTTCCCCCTCTCCCTC
GTTTTCTTTTTTTCCTTTTTACCACCTTGCCCCTTTTTACTTTTTTCCCC
CTTGCCACCACTGCAC
TTTTTTTTTTTTTNCCNTTTTTTTTTTTTTTTCCCTTTTTCCCCTCCCCC
TACTTNNCCCACCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTTCTCGCGAAATTCACCGTCGTCTGTCACCT
TACCTGTGATTGGCCTTGGATTGGAAGACGGTCTCTTGCCTTGGGTATCC
GTTGGGTGCTGTCACTCTGGCCCTGCCCATGGCGGTGATCATGGAGCCAT
TCCAGGCCTAGGCTGTCTTCCTTTAGTCCCCAGAGAGCTCTACTAGCGGC
TGAGCCAGAGGGGTCTTGTCCTGAGATGACTGATGGTTCTATTAATGCCA
AGCTTGTGTTAGTGCTCTGGCTGGATTGATTGGGCCCAAAGACGATGGGG
TCTTTGGGGTCTGATTCATTGAATCTCCTGCAAAACACCATGTAGTGCTA
TGGAGAACCCTACAATCTGGTTTGTCAGCCTTCCCCGAATTCCAACATTA
TCTGTATTTGTTTAGTCTTGCACCTGTGCCGGTATATAATGCCAGGCCTT
CCTTTATCATCTTCTTGTCCCTCTTCCTCCTTTTCTATTAACGTCCACTG
GTGTATGCATTTTTTTGTCCTTTTTTTGTCCCTTGTTTCCCGCCTTTTTT
TACCGTACCGCCCCCCTTTTCCCTTCCCGCTTCCAGTTTTTTTTTTTTCC
CCTTCCCGTTTTTTCTCGCCCCGCCCTTTTTTTCTATTAATTGACCCCCC
CGCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_d04.b1 MSMg01no069_d04.b1 CHROMAT_FILE:
MSMg01no069_d04.b1 PHD_FILE: MSMg01no069_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:53 2005
         (209 letters)



>mm_chr8_13633835_13634443
          Length = 609

 Score =  294 bits (152), Expect = 3e-84
 Identities = 191/204 (93%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattctttttctcataaaagctgagtatatgtgcctgattgtatttgaagaggataaga 65
           ||||||||||||||| |||||||||| |||||||||||||||||||||| ||| ||||||
Sbjct: 409 gaattctttttctcagaaaagctgagcatatgtgcctgattgtatttgaggagaataaga 350

                                                                       
Query: 66  ctggtgctccctgacccagccttgagtgtagatctttgctgtgacttacctgattgtgtt 125
           ||||||||  ||||| |||||||||||||||| |||||| ||| |||| |||||||||||
Sbjct: 349 ctggtgctgtctgactcagccttgagtgtagagctttgcggtggcttagctgattgtgtt 290

                                                                       
Query: 126 gcttgtcaataccaacataaagtgatattgaaaggtgccagtgtgtaacttcatgttttg 185
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 289 gcttgtcaataccaacataaagtggtattgaaaggtgccagtgtgtaacttcatgttttg 230

                                   
Query: 186 ttggctgtttttagcactgctcca 209
            |||||||||||||||||||||||
Sbjct: 229 ctggctgtttttagcactgctcca 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 609
Length adjustment: 9
Effective length of query: 200
Effective length of database: 600
Effective search space:   120000
Effective search space used:   120000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no069_d04.g1 MSMg01no069_d04.g1 CHROMAT_FILE:
MSMg01no069_d04.g1 PHD_FILE: MSMg01no069_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:53 2005
         (116 letters)



>mm_chr8_13551475_13551990
          Length = 516

 Score =  217 bits (112), Expect = 2e-61
 Identities = 115/116 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtctcttgccttgggtatccgttgggtgctgtcactctggccctgcccatggcggtgatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 gtctcttgccttgggtatccgttgggtgctgtcactctggccctgcccatggcggggatc 260

                                                                   
Query: 61  atggagccattccaggcctaggctgtcttcctttagtccccagagagctctactag 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atggagccattccaggcctaggctgtcttcctttagtccccagagagctctactag 316


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 116
Length of database: 516
Length adjustment: 8
Effective length of query: 108
Effective length of database: 508
Effective search space:    54864
Effective search space used:    54864
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)