BAC Information

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BAC

Clone NameMSMg01-069D09
Chromosome8 (Build37)
Map Location 90,039,831 - 90,040,073
singlet/doubletsinglet
Overlap geneLOC100040294
Upstream geneAbcc12, Lonp2, Siah1a, ENSMUSG00000074178, BC004022, LOC666960, EG625298, EG330819, Cbln1
Downstream gene4933402J07Rik, Zfp423, LOC100040328, 5033428A16Rik, Heatr3, Papd5, Adcy7, Brd7, LOC100040369
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069D09.T7 (MSMg01no069_d09.b1)MSMg01-069D09.TJ (MSMg01no069_d09.g1)
ACCAG293522AG293523
length701711
length of high quality
(start - end)
244 (69 - 312)82 (132 - 213)
definitionCHROMAT_FILE: MSMg01no069_d09.b1 PHD_FILE: MSMg01no069_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:54 2005CHROMAT_FILE: MSMg01no069_d09.g1 PHD_FILE: MSMg01no069_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAGAGGATCCGCGGAA
TTCCTTTTTTCATAAACCTGATGACGGATGGTTTTACTTGGGAATGTCAG
ATTTTACACAGGTGAGGGAGGGAAGCATGTGGTAGAAAGTCCTTTGGTTT
AATCTTTTCTCCAGCTGGTGTAAGGCCCCACCCTCCCTCATGATGCTAGA
CAGTAGCAGCGGCCCACAGTCAGTCACATAATCATGAGGGCACATGCATG
TTCGGAGCATTTTACATATAAGCACTCCACAAATCCTATAAGATATTAAG
CACTTTTGTTATTTATAGGCTTTGTGTTGGAGATCTCGGCCCATTATTAT
GCTAATGAACGCTCTCTGTCATTAAGATGTGAGTCAGGATTCCTATATGT
TAAAAGCATTAAAGGCATTTTTAAGGCATCCCTAACTTGGTTTATTGGTA
TGTAACCCCTACATAATTTGGCGTATGACGGTCTGGTTTGACTTTAATTA
CTCATGGCTTACGTGTAATTTATCCCACTGGTATGACTTCTTATCAACTG
TTCGCCCACCCCGTCATTTTTCTTGTTTACACCTCTCTGTTCCAGCCTTT
TGTCTTCCCTTTATATACCGCGCCTTCTCGCCAATGCTTCCTCCCCCCTT
TTTCTCCACCCGTTTTCTCCCCACGATCTTGTTTACACCATTGGCTTTTG
A
CATGAAAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTGACACAAAGAATTCAGTAGCTAGAGATCTGGGTGACACCT
TGAAGTGTAACTTGAATATATCTCTGAACACTCCATTTCTAGTTCTTTCT
CATTGTGTGTTATGTACTTATTGATGTGGGTTGAAGATGAGACACTATAA
TTTGCCTTGTCCGGGTGGTGGTGCCACACGCCTTTAATCCCTGCACTTGG
CAGGCCGAGGCTGGCGGATTTCTGAGTTCAAGGCCTGCCTGGTCTACAAA
GTGAGTTCCAGTATTTTTTGTCAGGTCTATACAGAGTAACTCTGTCTCAA
ATAACTCTTAATATTACCCCTCCTCATATTAATATCTAATAATAATTATA
ATTATTTTAATCCTAACTTGCCTCCTTAAAACTTGTTGTCCACCTATTCA
ACTTTTTTCAGGGCCACTGTTCTATAATTTACCCCAGATTTTGTTCCTCT
TATGCTTTTCCGGATTAGAACGGATTTTATTTACCTGCCTCCTGCTGTTG
CTTTGAGCTCTTTTCATGTGATATGTTTCCCCCCCCTGGCTGCGTTTCTT
TCCCGTGACCTGTTTTTTTCTCGGTGTTCCTATTCCTAATACCACTCAGA
TTCCATTCTGTAATCCGTCCGGTATTCGCTTCCCTTCCGCTTCAACTTTT
AATTCTTGCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_d09.b1 MSMg01no069_d09.b1 CHROMAT_FILE:
MSMg01no069_d09.b1 PHD_FILE: MSMg01no069_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:54 2005
         (244 letters)



>mm_chr8_90039631_90040274
          Length = 644

 Score =  439 bits (227), Expect = e-128
 Identities = 239/243 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgatgacggatggttttacttgggaatgtcagattttacacaggtgagggagggaagcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgatgacggatggttttacttgggaatgtcagattttacacaggtgagggagggaagcat 260

                                                                       
Query: 61  gtggtagaaagtcctttggtttaatcttttctccagctggtgtaaggccccaccctccct 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 261 gtggtagaaagtcctttggtttaatcttttctccagctggtggaaggccccgccctccct 320

                                                                       
Query: 121 catgatgctagacagtagcagcggcccacagtcagtcacataatcatgagggcacatgca 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 catgatgctagacagtagcagcggcccacagtcagccacataatcatgagggcacatgca 380

                                                                       
Query: 181 tgttcggagcattttacatataagcactccacaaatcctataagatattaagcacttttg 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgttcggagcattttagatataagcactccacaaatcctataagatattaagcacttttg 440

              
Query: 241 tta 243
           |||
Sbjct: 441 tta 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)