BAC Information

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BAC

Clone NameMSMg01-069E01
Chromosome8 (Build37)
Map Location 92,017,955 - 92,018,187
singlet/doubletsinglet
Overlap genenone
Upstream geneNkd1, 9130017C17Rik, Nod2, Cyld, LOC675985, Sall1, LOC100041089, EG625801, EG384862
Downstream geneTox3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069E01.T7 (MSMg01no069_e01.b1)MSMg01-069E01.TJ (MSMg01no069_e01.g1)
ACCAG293553AG293554
length653755
length of high quality
(start - end)
233 (112 - 344)---
definitionCHROMAT_FILE: MSMg01no069_e01.b1 PHD_FILE: MSMg01no069_e01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:57 2005CHROMAT_FILE: MSMg01no069_e01.g1 PHD_FILE: MSMg01no069_e01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCGGCGCTATACGACTACTATATCCAGAGGATGCGCGGATTCAGCCGTT
TTCCGAAAAAGTGTCTGCATTGTGGAAGAAGATAATGTTAAATCTGCCCT
TCATATCCCCATCTCTGCTTGGGGAAGTAGAGATTCGGGGGCAAACACAT
TGAATCGCTCCTCGTTTCATTATTTTTGACATTGATTTGTCATTAGGAAA
ATTTATTAGGCTCTAGATTAAATTGATTTGAAGAATCATTAATTCATGGG
ATGAAGCAAGAGGTGCTTGGTCTCCTCACAGTGAAATGAGGCAGTATTGA
TAATATATTGGGGGAAACTAGCAAAGCTGTCTAAAAATTCACCTTTTTTT
ATCTGCACCACTCATCGTAGATGTGAGTCGTAGCTGGATGGTCTGATGAT
AAGCTTCTTCTATAATGTAATCAGAACAGGAGATTTTCAACATCTTACTC
AGGGTGAAAGAGGGACACTGATTTCAGAGAGGCTAATTGGAAGAATGACA
TTCATTTATTTAGAGAAAGGGTTCAATATGTTGTACCAAATATACCGAGT
AACCTCTTGTCTGTCTCTGAATCTTGCCTTCTCTTCCTTTCTGTCCTCAT
GATTCCTTTTACCAAGCCTCATATAGCGGCTCCGCAAAAAGCCACTCCAA
TTC
TGAAAGGGTAAGCTGGGAGACGGCCGGGTTCCCAAAAAAGGGGGGAAAAA
AAAAGTTTGCCCGAAAAATAACGGCCCGAAATAAATTAGGGGGGGTTTTG
GGGTGGGGTTGTCCGCCCCCAAAAAGGTTTTCTATTCCCAGCGTGGGGGT
GGAGATCCCTGTTGGGGAGGAACTGGTTATCAAAAGAAAACTTTAGCATT
TCTTTGTTAAAAGTACAGGGGGGTGTGCTTTCTTTTCCTCTTTTCTGATA
CGCGATCGACGCAGTACCCCTGTACCGGATTCTCCTCGCCCCAGCGAATC
TAATATTAGGTTTGTGAGGATTACTCCTTACTTATCTCTTTTTGGTTTTG
CTGTGGCTGTAGCGTGAGAATACGTTTTTTTCTTGGTTACGCCCCCCACT
TCACTCTATACATCTCTTCTTTCTCCTCCCATGTGCCATCTCGTTGTTTG
TTAAGTTATCCGAGTTAGTGTTTGGGCGAAGCGTCTATACCAATCCGTTG
TCCTTTTCCCTATTGCCTTTTAGCAGTAGTCGTTTACTGTTTCTCTTCTT
TTACCTATTTGCTGATTCGAAACTTTATAACCCCTGTCCAGGTTGACCCT
TTTCCTCGTCACCTTTATTCTTAACTTCCCCCACATTCGCTCCTTTCTCG
TTTCGCCCTCCTGCGTTTTCCCTTCCTCCTTCCCCCCTTCCGGTTTGCTT
CCTTTGCCCCCATGTCTTCCCTTTTCGCCCTTTTCCCCCCATTTCCCCGC
CCGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_e01.b1 MSMg01no069_e01.b1 CHROMAT_FILE:
MSMg01no069_e01.b1 PHD_FILE: MSMg01no069_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:57 2005
         (233 letters)



>mm_chr8_92017755_92018387
          Length = 633

 Score =  427 bits (221), Expect = e-124
 Identities = 230/233 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctctgcttggggaagtagagattcgggggcaaacacattgaatcgctcctcgtttcatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tctctgcttggggaagtagagattcgggggcaaacacattgaatcgctcctcgtttcatt 374

                                                                       
Query: 61  atttttgacattgatttgtcattaggaaaatttattaggctctagattaaattgatttga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 atttttgacattgatttgtcattaggaaaatttattaggctctagattaaattgatttga 314

                                                                       
Query: 121 agaatcattaattcatgggatgaagcaagaggtgcttggtctcctcacagtgaaatgagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 agaatcattaattcatgggatgaagcaagaggtgcttggtctcctcacagtgaaatgagg 254

                                                                
Query: 181 cagtattgataatatattgggggaaactagcaaagctgtctaaaaattcacct 233
           |||||||||||| |||  |||||||||||||||||||||||||||||||||||
Sbjct: 253 cagtattgataaaataaagggggaaactagcaaagctgtctaaaaattcacct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)