BAC Information

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BAC

Clone NameMSMg01-069E23
Chromosome8 (Build37)
Map Location 127,463,931 - 127,464,162
singlet/doubletsinglet
Overlap genenone
Upstream geneNup133, Abcb10, Taf5l, AK122209, LOC100042530, LOC100042535, Galnt2, Pgbd5, Cog2, Agt, Capn9, 2310022B05Rik, Ttc13, Arv1, 2310031A18Rik, LOC668444, Trim67, 2810004N23Rik, Gnpat, Exoc8, Gm505, Egln1
Downstream geneTsnax, Disc1, Sipa1l2, 4933403G14Rik, 2310079N02Rik, E330039K12Rik, BC021891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069E23.T7 (MSMg01no069_e23.b1)MSMg01-069E23.TJ (MSMg01no069_e23.g1)
ACCAG293597AG293598
length578696
length of high quality
(start - end)
---232 (125 - 356)
definitionCHROMAT_FILE: MSMg01no069_e23.b1 PHD_FILE: MSMg01no069_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:02 2005CHROMAT_FILE: MSMg01no069_e23.g1 PHD_FILE: MSMg01no069_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAAAATNGNTTTTCTACCCGCNAAGGGNNNTTTCCCCACCGAANANNCA
CCANNCAAAGCANGAAAAAAGTTTTTTCCCAGAAAGAGGNCAAANANNAG
NGACCACNNGNGNNNNCCCCNCCCGCACCACAACGACAGCCCCNGCCCGC
CCGNCCGAACGAACCCCAAAGCNCGCACTTTTTTCTCANATCCCACACCG
CACACACCAGCACAACACCACGCCCCAAACCTCCCCCTCCCTAAACCAAA
CCCCAACGANCCCAANTTTTTTTTCCCCCCCCCCCCCCCCCAAACNNANG
NNANNANNTGCAAAAATACCTACAAAAAAAAAAAAAGAAAACAACCCTCT
TCGCCCAACCCCCCCACGCATCCACCGCTTACCCTCCCTTCCAACTCACA
TCCACAACTCAACTACAAACCCTTCCCCACCAACAACAACCCACCAATAC
GCCCCCCCAAAACCAAAACCCCACCCCCCTACACCTACCCCCTCCCCCTT
CCTCCCAACCCCAAGCCCAACCAACCACCTCTTTTTTTTTTTACCAAAAC
ANACACCCAAAAAAGGCGGAAAAGAAAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTCAGAAAAACCTGATCCTCCTGCCTCCTCCCCCCTAAGTGC
AGGGTTTACTGTCTTGCTCCTACCTCAGTTTCTGAGATCATGGACCAGGA
GGTTTTGCTCTCGAGTGAGGCACAACTCTAGGAGATATTCGGACCACTGA
CAGAGGGGAGGGGAGGCTTCTGAAACCCCCAAACTCGATGCTTTCTCCAA
AATGACAGTTTCTCTGGTAAGCTTTCCTAGCCTATGGACTACCAGGGTTC
AGCTTCTGAGCGCCTCTTTTTTAGCAATCCGCCCAACCCAGCTAGGAGCT
TTCCCTTTTTTTTCTGAGCTGACACGACAGAGATTGACCTGGCATCTGGG
GCCCACAAAAGGCCGATTCATAGTGTATGAAGATAGATACTATAGAAACA
GGTCACACACAGAATCCAGTTTAAACCTGTTCCTCCATCCACTGACTCCT
GTCCTGCCTTACTAGCCCCCACTTCTTCTAACACAGGGGAACTCAAAATG
AAACACGCTGTGTTTGTCAAGCCTTTCTAATAATGGGGGGGGGGGGGCCT
GTGTTCTCTCCCCTGTAGATTCACTTGCTTGGTTGCCAAACCGTTGTTCG
TATCCCGCTTTCTCTGTTGCGCCCTTTGCCCTCTTTATCCCACTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_e23.g1 MSMg01no069_e23.g1 CHROMAT_FILE:
MSMg01no069_e23.g1 PHD_FILE: MSMg01no069_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:02 2005
         (232 letters)



>mm_chr8_127463731_127464362
          Length = 632

 Score =  383 bits (198), Expect = e-111
 Identities = 223/238 (93%), Gaps = 12/238 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagtttctgagatcatggaccaggaggttttgctctcgagtgaggcacaactctaggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagtttctgagatcatggaccaggaggttttgctctcgagtgaggcacaactctaggag 260

                                                                       
Query: 61  atattcggaccactgacagaggggaggggaggcttctgaaacccccaaactcgatgcttt 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 atattcggaccactgacagaggggaggggaggcttctgaaatccccaaactcgatgcttt 320

                                                                       
Query: 121 ctccaaaatgacagtttctctggtaagctttcctagcctatggactaccagggttcagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctccaaaatgacagtttctctggtaagctttcctagcctatggactaccagggttcagct 380

                                                                     
Query: 181 tctgagcgcctctttttt------agcaatccgcccaacccagctaggagctttccct 232
           |||||||||| |            ||||||||| ||||||||||||||||||||||||
Sbjct: 381 tctgagcgcccc------caaaacagcaatccgtccaacccagctaggagctttccct 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)