BAC Information

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BAC

Clone NameMSMg01-069J03
Chromosome8 (Build37)
Map Location 93,408,754 - 93,408,920
singlet/doubletsinglet
Overlap geneChd9
Upstream geneTox3, LOC100041133
Downstream geneLOC100041156, EG626231, Rbl2, Aktip, LOC667162, LOC100041222, Rpgrip1l, AJ237917, LOC100041254, LOC674324, LOC100040628, Irx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069J03.T7 (MSMg01no069_j03.b1)MSMg01-069J03.TJ (MSMg01no069_j03.g1)
ACCAG293797AG293798
length709737
length of high quality
(start - end)
172 (53 - 224)41 (77 - 117)
definitionCHROMAT_FILE: MSMg01no069_j03.b1 PHD_FILE: MSMg01no069_j03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:22 2005CHROMAT_FILE: MSMg01no069_j03.g1 PHD_FILE: MSMg01no069_j03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTCCCTTATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGAGGA
TCCGCGGAATTCTAAAGTCTCCTGATATATCTAGGCTCTGGGTTTTAAGT
TTCAACCGGCAATGTCTGTCACTGGTTTCAGCAGAACTCAGCAGTTCTAA
ATGGGGAGTTTTCTTTGTGTTGAAGTGATCTTACGGTTCCTTGCTGTCCA
TGGATGTCACATATTCATCCATACTAGTCTGAGGATTCTTCATTCACGCT
TATCTGTTTGACCTCCCTGCTATGCTCGTTTAGGACTCTGTACCCTCAGT
TTCTGGCTTTCTGAGCATTGCGCTTTTCTCATGAAGTAATAGTCCCCCAC
GCGCGATTTTGTATAATTCCTGTCTACTCAATAAGCTTATATTATTATCT
TATTACTCACTGTTATTTCTCTCCTGCCCCTTTTTTTTTCTTTTCTCGCG
TACTACATATTTACTTATTAACATTCTCTTCGTATACCCTGTTCTCTCCT
CCCCCCCCCTTGTTTTTTTGCAACACCCCTTCTCAAAATTACCCCTTTTT
TGTTTTGCACCCCTATTTTTATTCCCTTTCCCCTCTCCCTTTTTCCTTCC
AGATTTTCCTCTCTTTTTTTTACCCCCCAACCCCCTTCTTCCTTTGTTCC
TCCCCTATTTCTCCATCTATTTTTTTTACTACCTATCCTCTTTCCCCTTA
CGCTATTAT
TTCCCCTCGATGAAGTGTTAGGCCTGGCGGCCGCCTGTGTCCCAAAATTG
AGGTGACCTATAGATGTCCCCGAAAAATTCTCTTCCTTTATTTCCACTGA
CTTAGATGAATCTAAGTCATCTTTCTCGTCTTTCTGTACATCTAAAGCAT
TATGACTGACACAAGGCCTGTAATATGAAGATTATTGCCTGTCAGTGCTT
ATCATTTCTGTGTATCTTATGCCACACTCCTACCGTGGTTTCACTAGCTA
TGTGTTCTGTCATGCTGCCCGCTGAACTCTTTGCTTCTCTCGGACGAAGT
CGTAACGTCAACCTTGGCACACAGCTGTACTCCTCTATTCTCCGAACTAT
CGACCTCCCCGTTTTTACCTCTCTTTCTTTTTTTTGCCCCCCTCCCGCCC
ACTTTTCTCTATTTTCCTCTCCGCCTCACTCTCTGCCTGCCTTTTCCACT
CTTTTCCCTTTTTTTGCCCCACCCCATTTGGTTACCCCTGACCCCCTCCC
CGATTATCATACCGCCCCAACCCCCTCTCCCCCCGTTTTTTTTCCTCTCC
CCTTCCCCTATTACTATTCCTCCCACTTTTTGTTTTTTCACTACCCGCCC
CCCCCCCCTGCCCCTTACATTCCCCACCCCCCTTTTTTTTTGGCTTGTAC
TTTCTTGAATCAGATCGCGTACATCCGATGCCTGCTTCAGCGCATCTTTT
TGGTAACACCCTCGGTTCAACCTTGCCATCCCCTGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_j03.b1 MSMg01no069_j03.b1 CHROMAT_FILE:
MSMg01no069_j03.b1 PHD_FILE: MSMg01no069_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:22 2005
         (172 letters)



>mm_chr8_93408550_93409120
          Length = 571

 Score =  294 bits (152), Expect = 2e-84
 Identities = 164/168 (97%), Gaps = 1/168 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaaagtctcctgatatatctaggctctgggttttaagtttcaaccggcaatgtc 64
           ||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaaagtcttttgatatat-taggctctgggttttaagtttcaaccggcaatgtc 263

                                                                       
Query: 65  tgtcactggtttcagcagaactcagcagttctaaatggggagttttctttgtgttgaagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgtcactggtttcagcagaactcagcagttctaaatggggagttttctttgtgttgaagt 323

                                                           
Query: 125 gatcttacggttccttgctgtccatggatgtcacatattcatccatac 172
           ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 324 gatcttacggttccttgctgtccatgggtgtcacatattcatccatac 371


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 571
Length adjustment: 8
Effective length of query: 164
Effective length of database: 563
Effective search space:    92332
Effective search space used:    92332
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)