BAC Information

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BAC

Clone NameMSMg01-069K05
Chromosome8 (Build37)
Map Location 78,317,681 - 78,317,869
singlet/doubletsinglet
Overlap gene1700007B14Rik
Upstream geneIsx, Hmgb2l1, Tom1, LOC100039134, Hmox1, Mcm5, Rasd2, LOC675507, LOC384845, LOC666211, LOC100039229, LOC666036
Downstream geneLOC100039185, EG631594, LOC666226, LOC100039211
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069K05.T7 (MSMg01no069_k05.b1)MSMg01-069K05.TJ (MSMg01no069_k05.g1)
ACCAG293848AG293849
length679711
length of high quality
(start - end)
288 (57 - 344)189 (125 - 313)
definitionCHROMAT_FILE: MSMg01no069_k05.b1 PHD_FILE: MSMg01no069_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:27 2005CHROMAT_FILE: MSMg01no069_k05.g1 PHD_FILE: MSMg01no069_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCCGCTATACGACTCCTATTTCCAGAGGATCCGCGGAATTCTTTATATTC
TCTTGGATATTACCTCTCTGTCAGATATATGGTTAATGAAGATCTTTCCT
CAATTTGCCGGCTGCTGTTTTGTCATATTGACAGTGTCCTTTGCCTTAGA
GAAGCTTTTTAGTTTCATGAAGTACCATTTATCAATTGTTGATCTTAGAG
CCTAAGCCATTGGTGTTCTATTTAGGAAATTGTCTCCTATACCATAGTGT
TCAAGGCTATTTCCCACTTTGTCTTGTCTTGTATTTAATGCATTTGGTTT
TATGTTGAGGTCCTTGCTCCACTTGGACTTGAGTTTTGTGTATTTTTGTT
TTATATACGCCCTGCCTGCATTCTTCTATATGCAGACATCTGGTTAGACA
TTTGGTGAAGATACAATTAATCCCCCTACTGTATGGTTTGGCTTCTTTAT
CTAAACTTAACTGACCATAGGCGTATGGTTTCATTTTTTGGTCTTCGATT
TTATCCCATTGTTCACCCTGTCTGATTTTATACTTTTCTATGACCTTCTA
ATTACTATTGCCTTGTAATATAGCTCGTAATCCCGCCTTCTTGACACCCT
CTTAATTTCCGCGTCTTGCCTCCTGACCCTTTTCGGTTACACCTTAACAT
TCGTTCTCCTCTTTTTCAATGTAATCATT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTAGGGGAAGGATGTCTTGGCCATGA
AAGTCTAGGCTCACTACCCCACACAGAAAAAATCTTGAAGACACCGGCCC
ATCACTGCAAGAATTTACAGCTAAAATAAAAGCTGCTAAATACCTCTGGT
ATCAGAATGAGGACAGACGGTTTTACAGGAGGATAACATTTCTATCATTT
AAGTGATATTAATTGAAAGCATGCTAAGTTGGCATTGAAAAGATCCCTTT
TGGGGGTGCTTGTCTGTATTATAAATGACCCAAGATGTATGTTTTGCTGA
GAGATTATTTGTTTTCTCCTCCCCCCGACCAAAAGAGTATCATCACATCA
TGCTCCATTGGAACTCTAACGAAATAAGAAACAATCGTTCTGAAGTGGGC
TTGACCTCTATTACGCTCTACAACCCGTATCCTTTCCAATATACCTCTCC
CTTTCTTATTACTCTCGTCTTCCTTTTTACACACCTGATCCTCTATACCG
CTTTCCATTTAACCCCTCCACTGAACCTTTCTATCTTTCTTCTCCCCCCC
CTGTCTTTCCTCTTATCCCAACTCACTTTCCTTTCCCCTTCTTGCCTACT
CTAACGTACCTTTACCACTTTTCTTACTTTTTCTCCTATTCCCCCCTTTT
CCCCCCCTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_k05.g1 MSMg01no069_k05.g1 CHROMAT_FILE:
MSMg01no069_k05.g1 PHD_FILE: MSMg01no069_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:27 2005
         (189 letters)



>mm_chr8_78317481_78318069
          Length = 589

 Score =  366 bits (189), Expect = e-106
 Identities = 189/189 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaaaaaatcttgaagacaccggcccatcactgcaagaatttacagctaaaataaaagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 agaaaaaatcttgaagacaccggcccatcactgcaagaatttacagctaaaataaaagct 330

                                                                       
Query: 61  gctaaatacctctggtatcagaatgaggacagacggttttacaggaggataacatttcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gctaaatacctctggtatcagaatgaggacagacggttttacaggaggataacatttcta 270

                                                                       
Query: 121 tcatttaagtgatattaattgaaagcatgctaagttggcattgaaaagatcccttttggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tcatttaagtgatattaattgaaagcatgctaagttggcattgaaaagatcccttttggg 210

                    
Query: 181 ggtgcttgt 189
           |||||||||
Sbjct: 209 ggtgcttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)