BAC Information

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BAC

Clone NameMSMg01-069M18
Chromosome8 (Build37)
Map Location 37,635,354 - 37,635,664
singlet/doubletsinglet
Overlap geneDlc1
Upstream geneMfhas1, LOC100041572, Gm501, Cldn23, LOC671641, D8Ertd82e, Lonrf1, EG544878, 6430573F11Rik
Downstream geneLOC100042892, A730069N07Rik, AI429214, LOC666877, LOC100041616, 1700016D18Rik, LOC641121, LOC621149, Sgcz
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069M18.T7 (MSMg01no069_m18.b1)MSMg01-069M18.TJ (MSMg01no069_m18.g1)
ACCAG293970AG293971
length718655
length of high quality
(start - end)
315 (42 - 356)---
definitionCHROMAT_FILE: MSMg01no069_m18.b1 PHD_FILE: MSMg01no069_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:39 2005CHROMAT_FILE: MSMg01no069_m18.g1 PHD_FILE: MSMg01no069_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAGACTTGTTTGCCACGTAACAAATAAATCAGCCTTAATCACAGATCACT
TGGCACTCAATGCTATTTCCCCATCCACTTGTTAGCTGTTTCTAGCCAGA
ATATCTATATTCGATGTGGCAGAAATCTAGCACCATGGTGGTGCACAGTC
ACTTGAAAAGGCGTTCCCTTTCTGAGCTCAGTCACTACCCAGTGAAGCAC
CCTGTTGGGACAAACATGACTGTGCTTTGAAATCGCTCATCACTGTTCCC
GACATCTACCTCTGGTTTTGAAGGCTGTAATCATATTGTACGTTTGAGTG
GCACATGTTTTCTTTCCTGACGCCTCGCCATCCATGTCACAGTCAAATCA
ATTTGGGACTCTCCTCAATACGACGTAGACCCGCGCATGGTGGGGCGTCA
TGCTGTTTTGTACGTATTGGCAGATTTCTGTCTGGTTGTCCAGTATTTCC
CTCACCTTGCATTCCACCTTGTCCACATCCCTGAGCTGTCCGCTCCTCCT
GAATGTCGCCTTTACCATTTCCTCGTTTGTCGTCGCCTATTCCGATATTT
GACCTCCTTACGTCTTTACGGTTGTCCTTCCGCTGACCTGAAATAGAATA
TTTGCTTTTGTTTGTTTGCTTTGTAAAATGCATATTCCCCTTTTTTCCCC
TCGTTCACCCCTTTTACT
CAAAAGCAGGTTTCCCCAGCGNNGANNNANAGAAGGTTCCCAAAGAGGGA
GNNGAGGAAAGGGAANGGAGAGAAGCACGGAAAAAATTTTACCCCCAAAG
CGGGGGGAAAGGAAANCAAAAACCCGGAGANCCACCGCACACCAGGCAGA
AGGCCAAGACAAAAACCAGGCGAAGCAGACGCGGGCGCGGACGCGGAGAA
AGAGGAACACTCTTTTCACGCGCGGGAGCGCAGGCCCGCAAACCACTCCG
GAGACAGCCAGGCGNCCCNCATTTATCGTTATAGACGACCGGACGACCAA
GAAAAATTTTGGTGGGTTCCCCCCCCCCCCCCCAAANNGGAAGAAGGAAG
GGGGGNGCNNNGCCAAAAANNNTCATNNNAAAGGCCNNAGCNNNCGGGCC
CCNGACGCCCCGCCCCCCAGGCACGGCACAAACAACAGGCGAACAAACCC
CGAAAGGACACCACCCCGCACGCAACAACAGGACCGAACCACAAACCCAC
ACAACCCACACCACCCCAAGAAAGCGCAACCACCAAAAAAGAACACGGAC
CCACCCACACACCCGGAAACGGGCGCCCAAAAGACCCACAAATTTTTTTT
TTTATCGCTAGGTAGGTAAGGGTATAAAACACAAACATTCCACAATAAAC
AGAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_m18.b1 MSMg01no069_m18.b1 CHROMAT_FILE:
MSMg01no069_m18.b1 PHD_FILE: MSMg01no069_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:39 2005
         (315 letters)



>mm_chr8_37635150_37635864
          Length = 715

 Score =  559 bits (289), Expect = e-164
 Identities = 306/315 (97%), Gaps = 8/315 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagacttg----tttgccacgtaacaaataaatcagccttaatcacagatcactt 60
           |||||||||||||    |  |  |||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagacttgggagt--g--acgtaacaaataaatcagccttaatcacagatcactt 260

                                                                       
Query: 61  ggcactcaatgctatttccccatccacttgttagctgtttctagccagaatatctatatt 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcactcaatgctatttccctatccacttgttagctgtttctagccagaatatctatatt 320

                                                                       
Query: 121 cgatgtggcagaaatctagcaccatggtggtgcacagtcacttgaaaaggcgttcccttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgatgtggcagaaatctagcaccatggtggtgcacagtcacttgaaaaggcgttcccttt 380

                                                                       
Query: 181 ctgagctcagtcactacccagtgaagcaccctgttgggacaaacatgactgtgctttgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgagctcagtcactacccagtgaagcaccctgttgggacaaacatgactgtgctttgaa 440

                                                                       
Query: 241 atcgctcatcactgttcccgacatctacctctggttttgaaggctgtaatcatattgtac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcgctcatcactgttcccgacatctacctctggttttgaaggctgtaatcatattgtac 500

                          
Query: 301 gtttgagtggcacat 315
           |||||||||||||||
Sbjct: 501 gtttgagtggcacat 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)