BAC Information

Click to search

BAC

Clone NameMSMg01-070H04
Chromosome8 (Build37)
Map Location 85,445,133 - 85,445,292
singlet/doubletsinglet
Overlap geneRnf150
Upstream geneInpp4b, LOC671182, Il15, EG666564, LOC675800, EG666289, Zfp330
Downstream geneLOC100039688, Tbc1d9, Ucp1, Elmod2, 4933434I20Rik, Clgn, Scoc, LOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97, EG384857, Lphn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070H04.T7 (MSMg01no070_h04.b1)MSMg01-070H04.TJ (MSMg01no070_h04.g1)
ACCAG294467AG294468
length690690
length of high quality
(start - end)
160 (231 - 390)345 (70 - 414)
definitionCHROMAT_FILE: MSMg01no070_h04.b1 PHD_FILE: MSMg01no070_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:31 2005CHROMAT_FILE: MSMg01no070_h04.g1 PHD_FILE: MSMg01no070_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGAAATCCGCGGAATCT
CATTGATTCCGATACTAGGGATTATACCTAATTGCTATAATCAAACACGA
CTCAACTGACATTGGGGTGAGGGGGAATCGGGATCAGCTTCAGGATTCAG
AAATAACCACAGTGAACATTTTTGGAGATAACCTATTTCCTATCTTATTT
TTAAATATAGTGTATTATGCTTAATTACACACATAATTTAATCATGTGAA
TATAATTAGTGTATAATTTTAAATCAAATAAGTCTGTGTTTTGAAAATAA
GAATTAATGTTTGCGGAAGGCATTCCATTACCAGGCTTTGTTCTAAGTGT
CAATCGTTGCAAAATGCATCCCCCAAACTAAGATCAGATACAATGAGACA
GAATTTATGTCTCAAAAAAGTCCTGTGAGAAAATCCCGGTGAGATAGGAG
CTGTATCTTTCTCCCTTGCACAAGTGAGGAAGCTGAACCATGAGACTGTT
CATTAACTTTGTAAAGGCACATTGCTGGCATTGGACAGTCTCAGTGTGCT
CGTCTTCATTTTCCTGTAATTACCTATTTACAAATCATCAATTTTTTAAT
GCATAAAATCTTTAAGTATACTTTTTAAGATAGAATTCATATAGATGCAT
TTTCCTTATTTTAAACCTGCCCCCGTATCTATTGCAATTG
ATGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATATTTCTCTTGCTGTCCATGGCTCACAGTT
GGAAGGGAACTGTATATCACGGTAAGAAAGGTGTGGCAGTGGGACCTGCA
GCCAGGATCTCTCACATCTCCTTGGTTCAGCAAGCAGAGAGCAGGAGTGC
TGGGCTTCGACTTGTTTTCCCCTCTTTCCTTTGGTTCAGTCAGGATCTCA
GCCCATGGGGTGGTGCCAGTCCCCTGCAAGGTGTCCCCAGGTTCTGGTCA
AACTTCTCTGTAAACAATCTCACAGACACATCCCAAAGTGTGCCTCGTGA
ATGCTTTTGGTGTCTCCTAATGAAGTCAAGTTGACAATCCCAATCACAGG
TAGGAGGAACAACTGGTCCGTGGAACATGCAAGACACATGTGTGAAACGC
TGTCTGGCTGGGAGTTTCAGTTTGAATGTTGGTACATGTACACAGGTGGT
CCTGCCCAGTGCAGGGCTGAAAAACACCACCCCTCCCCCCGAGAAAATAT
TCTACCAACGTTCAGCCTCAGGAAAAGCAGATACTTAAAGTAGTTAGTTA
GTTTATGATTTTCTGGCAGCCTTTTGAAAACCTTTGTCTACTAATATGGA
CTGTGTGGCACCAAATTCCCACCCTGTTTGATTTTGACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_h04.b1 MSMg01no070_h04.b1 CHROMAT_FILE:
MSMg01no070_h04.b1 PHD_FILE: MSMg01no070_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:31 2005
         (160 letters)



>mm_chr8_85444933_85445492
          Length = 560

 Score =  302 bits (156), Expect = 8e-87
 Identities = 159/160 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acataatttaatcatgtgaatataattagtgtataattttaaatcaaataagtctgtgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acataatttaatcatgtgaatataattagtgtataattttaaatcaaataagtctgtgtt 260

                                                                       
Query: 61  ttgaaaataagaattaatgtttgcggaaggcattccattaccaggctttgttctaagtgt 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgaaaataagaattaatgtttgtggaaggcattccattaccaggctttgttctaagtgt 320

                                                   
Query: 121 caatcgttgcaaaatgcatcccccaaactaagatcagata 160
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caatcgttgcaaaatgcatcccccaaactaagatcagata 360


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 160
Length of database: 560
Length adjustment: 8
Effective length of query: 152
Effective length of database: 552
Effective search space:    83904
Effective search space used:    83904
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)