BAC Information

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BAC

Clone NameMSMg01-071D23
Chromosome8 (Build37)
Map Location 85,072,323 - 85,072,836
singlet/doubletsinglet
Overlap genenone
Upstream geneInpp4b, LOC671182, Il15
Downstream geneEG666564, LOC675800, EG666289, Zfp330, Rnf150, LOC100039688, Tbc1d9, Ucp1, Elmod2, 4933434I20Rik, Clgn, Scoc, LOC546077, LOC675854, Olfr370
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071D23.T7 (MSMg01no071_d23.b1)MSMg01-071D23.TJ (MSMg01no071_d23.g1)
ACCAG295078AG295079
length693697
length of high quality
(start - end)
516 (44 - 559)526 (75 - 600)
definitionCHROMAT_FILE: MSMg01no071_d23.b1 PHD_FILE: MSMg01no071_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:35 2005CHROMAT_FILE: MSMg01no071_d23.g1 PHD_FILE: MSMg01no071_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:35 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CAAAATTTGCGGCGCTAAACGACTCCTATAGTGCGAGAATACGCGGAATT
CTAATAGTTGTCACAGCTTTTGGTCTCCCTGTAAGAAATGAAATCATTGA
CAACAAATCAAGTAGATATTAGAATTGCTTTTTATCTTCCCAGAGATTTA
TGCTGCAAATTAATCCATATTTACTTTACTAAAAGTGGGAACATATGTTT
TGTAGTTATAAGAAAATACATTTGCATTTCATAACCAAAAAAAGAATTAT
AGATATGGCTAATTTCATATATAACAATTTGACCAAAAATGTATTAAACA
TTTATTTCACAATCAAATATAGATCATTCCTTCATCTACAAATAAAACCC
ATAAAAGAATTGGGAATGCCTATCTTAGCAATTGCTAACTTCTAAAACAT
GCTAGAGAGACAAGGGACATGCTTTTACATTATTAACAAATAATACTTAT
AGAATTCTTGTAAGTTCAAATAACTGCATGTAGTCTGGGCTATAACCTCC
ATGCTAGATTTAGATTTCCATATAATCACACTCTTCTTACATGGTTACTC
TTTAGTTTCTCATTGTAAGTTTTTGTTATGTGCATGCGAAAGTATATACA
AGGGTTAGGGAGATGGATCAGTAGGAAAATTGCCTACTACCCTTGTATGA
GAATCTGAGTTAGGATTTCCCACACCAACATAAAAGCCTAGTG
NACGATGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTCCGTTCAAAAGGAAGTGCAGGAAT
AAAGAGTGGAGCAGAGACTGAAGGAAAGGCCATCTAGAGACTGCCCCACC
TGGGGATCCATCCCATCTTCAGACACCAAACCCAGATACTATTGCTGATG
CTAAGAAGCATTTGCTGACAGGAGCCTGGTATAGCTGTCCCCTGAGAGGC
TCTGTCAGAGCCTGACCAATACAGATGCAGATGCATGCAGTCAAACTGGA
CTGAGCACGGTGACCCCAATGGAGAAGTTAGTGCAAGGACTGAAGGAGTT
GAAGGGGTCTGCAACCGCATAGGAAGAACAACAATATCAACCAACCAGAC
CCTCCAAAAACTCCCAGGGACTAAACCACGAACAAAAGAGTACACATGGG
TGGCGGGGGGTGGGGATCATGGCTCCAGCTAGATATGTAGCAGAGGACTG
ATTTATTTGGCATCACTGGGAGGGGAGGCCCTTGGTCCTGTGGAGGCTCC
CAAGGTAGGGGAATGCTAGGGCACTGAGGCAGGAGTGGGTGGGCTGGTGG
GGGAGCACTCTCATAGAGACAGGCGCTTTGTGGAGGGGAAGCTGGAAAGG
AGGATAACATTTGAAATGTAAATAAATAAAATAACCAATATAAAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_d23.b1 MSMg01no071_d23.b1 CHROMAT_FILE:
MSMg01no071_d23.b1 PHD_FILE: MSMg01no071_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:35 2005
         (516 letters)



>mm_chr8_85072121_85073036
          Length = 916

 Score =  955 bits (494), Expect = 0.0
 Identities = 509/514 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattctaatagttgtcacagcttttggtctccctgtaagaaatgaaatcattgacaaca 62
           |||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattctaatagttgggatagcttttggtctccctgtaagaaatgaaatcattgacaaca 262

                                                                       
Query: 63  aatcaagtagatattagaattgctttttatcttcccagagatttatgctgcaaattaatc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aatcaagtagatattagaattgctttttatcttcccagagatttatgctgcaaattaatc 322

                                                                       
Query: 123 catatttactttactaaaagtgggaacatatgttttgtagttataagaaaatacatttgc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 catatttactttactaaaagtgggaacatatgttttgtagttataagaaaatacatttgc 382

                                                                       
Query: 183 atttcataaccaaaaaaagaattatagatatggctaatttcatatataacaatttgacca 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 atttcataaccaaaaaaagaattatagatatggctaatttcatatataacaatttgacca 442

                                                                       
Query: 243 aaaatgtattaaacatttatttcacaatcaaatatagatcattccttcatctacaaataa 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aaaatgtattaaacatttatttcacaatcaaatatagatcattccttcatctacaaataa 502

                                                                       
Query: 303 aacccataaaagaattgggaatgcctatcttagcaattgctaacttctaaaacatgctag 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aacccataaaagaattgggaatgcctatcttagcaattgctaacttctaaaacatgctag 562

                                                                       
Query: 363 agagacaagggacatgcttttacattattaacaaataatacttatagaattcttgtaagt 422
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 agagacaagggagatgcttttacattattaacaaataatacttatagaattcttgtaagt 622

                                                                       
Query: 423 tcaaataactgcatgtagtctgggctataacctccatgctagatttagatttccatataa 482
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tcaaataactgcatgtagcctgggctataacctccatgctagatttagatttccatataa 682

                                             
Query: 483 tcacactcttcttacatggttactctttagtttc 516
           ||||||||||||||||||||||||||||||||||
Sbjct: 683 tcacactcttcttacatggttactctttagtttc 716


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)