BAC Information

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BAC

Clone NameMSMg01-071H15
Chromosome8 (Build37)
Map Location 75,913,987 - 75,914,517
singlet/doubletsinglet
Overlap genenone
Upstream geneEps15l1, Calr3, LOC100042421, 1700030K09Rik, Cherp, Slc35e1, Crsp7, LOC100042439, 9130011J15Rik, Tmem38a, Nwd1, Sin3b, F2rl3, Large, LOC100039001
Downstream geneLOC666134, Crry-ps, LOC666146
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071H15.T7 (MSMg01no071_h15.b1)MSMg01-071H15.TJ (MSMg01no071_h15.g1)
ACCAG295251AG295252
length695688
length of high quality
(start - end)
500 (46 - 545)531 (75 - 605)
definitionCHROMAT_FILE: MSMg01no071_h15.b1 PHD_FILE: MSMg01no071_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:53 2005CHROMAT_FILE: MSMg01no071_h15.g1 PHD_FILE: MSMg01no071_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAG
TAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAA
TCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGT
ACTTGAAGTATTAGCCAGAGAAATTCGACAATAAAAGGAGATCAAGGGGA
TACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATG
ATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACCT
GATAAACAGCTTCGGTGAAGTAGCTGGAAATAAAATTAACTCAAACAAGT
CAATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATTAGG
GAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTCGGTGT
GACTTTAGCAAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGTCTC
TGAAGAAAGAAATTATAGAAGATCTCAGAAGATGGAAAAATCTCCCATGC
TGATAAATTGGTAGGATCAACATTGTAAAAATTGCTATCTTGCCAAAAGC
AATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATT
NACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTTTTCAATTTTTTTGGAATCCCTA
CTTTTCCATACTCATCTAAGAAAAAAGCATGTAGGCGCTATAAAAGACAA
CATACCCTGGGGCAGATGCTCACAAGCCCAAAGGCTTTCCCCCTTTCTTC
ACTATTCAAGTATGAACCAGGCTAGACCCTGCTTAGCTTAGGGTGGTATG
GCCATAGGCAAGTTTGACTCCTCACTAAAAGACTTGAAGTAGATAATTGG
ATATTAAAATCTGAAGGTCAGGAAACATCTAAGCTGAAATTTTCTTAATT
TTTTGTACTTTTAAAATATGTATATGTACACATATGGGAACATTCATGTT
GAATACAGGTGCCCATTGAGGCCAAGAACTTTTTCCCACTTTCCCCTCTA
TAAGTTTTAGTGTCTCTGGTTTTATGTGGTGTTTCTTGATCCACTTAGAC
TTCACTTCTGTACAAGGATATAATAATGGATTAATTCCCAGTCTTCTACA
TGATAACTGCCAGTTGAAAAAGCACCATTTGTTGAAAATTCTGTCTTTTA
TTCCCTGGATGATTCTAGTTCCCTTGTCAAAGATCAAGTGACCATAGGTG
TGCGGGGTCTTTTCTGGACCTTTTAATCTATTCCATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_h15.g1 MSMg01no071_h15.g1 CHROMAT_FILE:
MSMg01no071_h15.g1 PHD_FILE: MSMg01no071_h15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:54 2005
         (531 letters)



>mm_chr8_75913789_75914719
          Length = 931

 Score =  973 bits (503), Expect = 0.0
 Identities = 524/531 (98%), Gaps = 2/531 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttttcaatttttttggaatccctacttttccatac-tcatctaagaaa-aaagcatgt 58
           ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 199 agttttcaatttttttggaatccctacttttccatacatcatctaagaaacaaagcatgt 258

                                                                       
Query: 59  aggcgctataaaagacaacataccctggggcagatgctcacaagcccaaaggctttcccc 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aggcgctataaaagacaacataccctggggcagatgctcacaagcccaaaggctttcccc 318

                                                                       
Query: 119 ctttcttcactattcaagtatgaaccaggctagaccctgcttagcttagggtggtatggc 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ctttcttcactattcaagtatgaaccaggctagaccctgcttagcttagggtggtatggc 378

                                                                       
Query: 179 cataggcaagtttgactcctcactaaaagacttgaagtagataattggatattaaaatct 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cataggcaagtttgactcctcactaaaagacttgaagtagataattggatattaaaatct 438

                                                                       
Query: 239 gaaggtcaggaaacatctaagctgaaattttcttaattttttgtacttttaaaatatgta 298
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gaaggccaggaaacatctaagctgaaattttcttaattttttgtacttttaaaatatgta 498

                                                                       
Query: 299 tatgtacacatatgggaacattcatgttgaatacaggtgcccattgaggccaagaacttt 358
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 499 tatgtacacatatgggaacattcatgttgaatacaggtgcctattgaggccaagaacttt 558

                                                                       
Query: 359 ttcccactttcccctctataagttttagtgtctctggttttatgtggtgtttcttgatcc 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttcccactttcccctctataagttttagtgtctctggttttatgtggtgtttcttgatcc 618

                                                                       
Query: 419 acttagacttcacttctgtacaaggatataataatggattaattcccagtcttctacatg 478
           |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 619 acttagacttcacttctgtacaaggagataataatggattaattcccattcttctacatg 678

                                                              
Query: 479 ataactgccagttgaaaaagcaccatttgttgaaaattctgtcttttattc 529
           | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 acaactgccagttgaaaaagcaccatttgttgaaaattctgtcttttattc 729


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)