Query= MSMg01no071_p01.b1 MSMg01no071_p01.b1 CHROMAT_FILE:
MSMg01no071_p01.b1 PHD_FILE: MSMg01no071_p01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:30 2005
(394 letters)
>mm_chr8_111765497_111766290
Length = 794
Score = 663 bits (343), Expect = 0.0
Identities = 380/393 (96%), Gaps = 2/393 (0%)
Strand = Plus / Plus
Query: 1 aagctaaaactagagctactatatgatccaaatttggcactccagagtatatgcccccca 60
||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 203 aagctaaaactagagct--tatatgatccaaatttagcactccagagtatatgcctccca 260
Query: 61 ataatcaaagtcagcatatcattaaaatgcagcaccccgatggctatcactgttctgtgt 120
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 ataattaaagtcagcatatcattaaaatgcagcacccccatggctatcactgttctgtgt 320
Query: 121 ataataaaggtgtggaatcaacttaagtgcattgcaacagatgacttttaaaactcagca 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataacaaaggtgtggaatcaacttaagtgcattgcaacagatgacttttaaaactcagca 380
Query: 181 tgcacaggcatacacacatgtgtgcatgcacacatacgcacatgcatacacaagccccat 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgcacaggcatacacacatgtgtgcatgcacacatacgcacatgcatacacaagccccat 440
Query: 241 tcaccacagaaaagcgtaaaaccattttatctgctgaaacaatgatggtattagaaatca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaccacagaaaagcgtaaaaccattttatctgctgaaacaatgatggtattagaaatca 500
Query: 301 tcacgttaaacaaaatcagccagagtcagccagacaagcgtctcatgtctttgctagtgt 360
|||| ||||||||||||||||||| |||| |||||||||||| |||||||||||||||||
Sbjct: 501 tcacattaaacaaaatcagccagactcagtcagacaagcgtcccatgtctttgctagtgt 560
Query: 361 gttgaacgtaaagacaaaaaggcatgaaagtag 393
|||||||||||||||||||||||||||| ||||
Sbjct: 561 gttgaacgtaaagacaaaaaggcatgaacgtag 593
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space: 302225
Effective search space used: 302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no071_p01.g1 MSMg01no071_p01.g1 CHROMAT_FILE:
MSMg01no071_p01.g1 PHD_FILE: MSMg01no071_p01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:30 2005
(444 letters)
>mm_chr8_111912375_111913218
Length = 844
Score = 762 bits (394), Expect = 0.0
Identities = 422/444 (95%), Gaps = 21/444 (4%)
Strand = Plus / Minus
Query: 1 caacaagctgggcatggtggcacactcctttaatcccagcacttgggaagcagaggcagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 caacaagctgggcatggtggcacactcctttaatcccagcacttgggaagcagaggcagg 784
Query: 61 gggatttctgagttcaaggccagcttggtctacaaaatgagttccaggacagccagggct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 gggatttctgagttcaaggccagcttggtctacaaaatgagttccaggacagccagggct 724
Query: 121 ataaagagaaaccctgtctcaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaac 180
|||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 723 ataaagagaaaccctgtctcaa------------------aaaacaaaacaaaacaaaac 682
Query: 181 aaaacaaaacaaaacaaaacaaaaaacaacaacaacaaaaagagaattccaacaatgaaa 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaacaaaacaa---aaaacaaaaaacaacaacaacaaaaagagaattccaacaatgaaa 625
Query: 241 tcagccacaatcttacaattgcccggcacttacaggagcatgacttggagttgtttctct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tcagccacaatcttacaattgcccggcacttacaggagcatgacttggagttgtttctct 565
Query: 301 ttgttttaatcagaaggacgcctataggtgaaggtctctcagaatgattggctagtctct 360
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttgttttaatcagaaggacacctataggtgaaggtctctcagaatgattggctagtctct 505
Query: 361 cttaagcatgtattggggggaaattactgctaccctaacagtttcatttaataagaacca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cttaagcatgtattggggggaaattactgctaccctaacagtttcatttaataagaacca 445
Query: 421 caatatttatgaaccaattcgcac 444
||||||||||||||||||||||||
Sbjct: 444 caatatttatgaaccaattcgcac 421
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space: 361956
Effective search space used: 361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
