Query= MSMg01no072_a08.b1 MSMg01no072_a08.b1 CHROMAT_FILE:
MSMg01no072_a08.b1 PHD_FILE: MSMg01no072_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:37 2005
(527 letters)
>mm_chr8_27531559_27532486
Length = 928
Score = 371 bits (192), Expect = e-107
Identities = 213/222 (95%), Gaps = 6/222 (2%)
Strand = Plus / Plus
Query: 2 ggaattcctcctatctc-caggctcgtctccagtacaccctttgtggttcttgtctcatg 60
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattcctcctatcccacaggctcgtctccagtacaccctttgtggttcttgtctcata 261
Query: 61 gtgtttatagccactattgtactcctggctctcaactttgcctctctgagtagatagggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 262 gtgtttatagccactattgtactcctggctctcaactttgcctctctgagtagatagagg 321
Query: 121 gaagaaatttctaattatagcaaaaagttctgaatgtaaaaaacaaacaaacaaacaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gaagaaatttctaattatagcaaaaagttctgaatgtaaaaaacaaacaaacaaacaa-- 379
Query: 181 aatgaacaactcaaaaaaaa-tcagggcatcctgggtattat 221
|||||||||||||||||| |||||||||||||||||||||
Sbjct: 380 --tgaacaactcaaaaaaaaatcagggcatcctgggtattat 419
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 928
Length adjustment: 10
Effective length of query: 517
Effective length of database: 918
Effective search space: 474606
Effective search space used: 474606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no072_a08.g1 MSMg01no072_a08.g1 CHROMAT_FILE:
MSMg01no072_a08.g1 PHD_FILE: MSMg01no072_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:37 2005
(430 letters)
>mm_chr8_27646371_27647204
Length = 834
Score = 758 bits (392), Expect = 0.0
Identities = 422/434 (97%), Gaps = 4/434 (0%)
Strand = Plus / Minus
Query: 1 tcttatgggtctcctgtaatttatataccaatacaattttatattactgattagtgagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 tcttatgggtctcctgtaatttatataccaatacaattttatattactgattagtgagtg 575
Query: 61 gtttggattttcccttccaccttcacatttattcaccctgattctttaatt----aaaaa 116
||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 574 gttcagattttcccttccaccttcacatttattcaccctgattctttgattaaaaaaaaa 515
Query: 117 aaaaattcctgaagcttaacttgaggaagtttgcttaacttgcataaactttctgtttga 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 aaaaattcctgaagcttaacttgaggaagtttgcttaacttgcataaactttctgtttga 455
Query: 177 aatcttgtctcgtggtcatttgcttccatagctgtgcctgtggacagtaaactcccttta 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 aatcttgtctcgtggtcatttgcttccatagctgtgcctgtggacagtaaactcccttta 395
Query: 237 ctgtggaggggagattaccttattcatgtccccattctcagaatctatgaaatgttttca 296
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ccgtggaggggagattaccttattcatgtccccattctcagaatctatgaaatgttttca 335
Query: 297 caaagaatactggttgacaaacagtctctgatagctcagcttctcctcagtgatcttgaa 356
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 caaagaatactggttgagaaacagtctctgatagctcagcttctcctcagtgatcttgaa 275
Query: 357 acctctgactttgctcccctttgccctacatcatgagggagtgcccatccctatctgaag 416
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 274 acctctggctttgctcccctctgccctacatcatgagggagtgcccatccctatctgaag 215
Query: 417 tttgacatgaggca 430
||||||| ||||||
Sbjct: 214 tttgacacgaggca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 834
Length adjustment: 9
Effective length of query: 421
Effective length of database: 825
Effective search space: 347325
Effective search space used: 347325
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
