BAC Information

Click to search

BAC

Clone NameMSMg01-073A19
Chromosome8 (Build37)
Map Location 14,923,275 - 14,923,764
singlet/doubletsinglet
Overlap geneArhgef10
Upstream geneFbxo25, LOC100041103, 2610019F03Rik, EG546036, Erich1, Dlgap2, LOC100041140, C030037F17Rik, Cln8
Downstream gene2900016B01Rik, 5830468F06Rik, Kbtbd11, BB014433, Myom2, EG665599, EG234097, EG665619, LOC634008, Csmd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073A19.T7 (MSMg01no073_a19.b1)MSMg01-073A19.TJ (MSMg01no073_a19.g1)
ACCAG296443AG296444
length723724
length of high quality
(start - end)
322 (38 - 359)490 (70 - 559)
definitionCHROMAT_FILE: MSMg01no073_a19.b1 PHD_FILE: MSMg01no073_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:00 2005CHROMAT_FILE: MSMg01no073_a19.g1 PHD_FILE: MSMg01no073_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTCA
CTTGCCAGTTCTAACCTCTGTCTTTCTAATATCAGTCAGGCTTTTGGTGG
AGTGTTGAGGGTTTTTTTCACATGGTTTTTTCACTTTACTTTTCCTAGTT
AGACACCTTTCATTTCTTCTCTGATGTAATGGTTCTAAGACCTCCAGTAC
TGTGCGGTGTACTGAATACGAACTGTAGCCATACAAGCCTTATGTTATTA
TAGACCTTAAAGGAACATCTCCAACATTTCCTCTGCCCTGCTCCACAGGA
TGTCAGCTATGGCTCTATCATTGGTCCGTAGTATGTTCGTGTGTGCTCTT
CCTATATTTATCNGTCCCCNACTTCCCCTGGAGAGATGTAGAAGCTGTGT
CTTGTGGGATAACCAGTCACATGGAAAAACCCTGCCTTCTGTGTATGCAG
TGGATTATTGGCTTGTATATGATAAGCCACCCTCATATTCTTGAGAATAA
ATGCCTCTTGATTGTGCTATACGAGCTCTTGATATGCACTTGCTATTATG
TTGAGAATGTCTCTTTGTTTTCACCGGGGATGTTAACCCTTGTTGGTTGA
TTATGCCCCATCTCCTTGGTCTTCACAGAATGGATGATGTTTCCTCTCTT
TGCCTTTTATTGATCCCTTTGATAATAATCCTTGCTTGTTATTTACAAGC
TTTGCTTAAATTCCCTACTGAAT
CATGAAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTCACCCTCATTAACAGGCTTGATGATGGC
TTTGGCACTTCCGGGAAGATGGCTGCCGGTGCCAAGGCTGGCGCCAGATG
CTCTGTAGAGCATCCCTGTCTGCCAGTGCATGTGCTGTTGGAAGCCTTTT
GCACCTGCCCCCAAGGCCCTTTGCCATGTGGCTCCATCTCACCCTCAAGG
GCGGGAGACGCTGCTTAGATGGCCACCCGAGTAGCTGGGTGTTTTCAGTG
GGCACCTGTTGTTTCTGCTCTGGCATGGGAGTCACTTCACCGGCACACAG
CACTCCTGGTGCACAGCCTCTCTCCATCAGACATGTGGTAAGCCTCAGCC
AGCTTTGACTGTCTTACAGTTGATAGTGTGTATAACTGCACCTCAGCTCG
AAGACTAGGTCCTATTACTTCAGATGAAGACGCTATCACTTGAGGACCCA
CAAGGCCCACCCAGGGTTACAGCGAGGGCAAGTGTTTGGGGTAGAGCCCA
AAGGTCCAGCACATAGGGTAGATAAGAGTCCAGAGGCCCTTTGCCTTTCT
GCTGGGAGAATTTTCTTCTGCACTGTGTGTGAAGGGTCGAGGATAATCTT
TCTCCTGCACTGTGTGAAGGTTGTCTTTGTATGACTCAAGTGTTGATATC
AGCAGATAGCGGTTACTGTCTGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_a19.g1 MSMg01no073_a19.g1 CHROMAT_FILE:
MSMg01no073_a19.g1 PHD_FILE: MSMg01no073_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:00 2005
         (490 letters)



>mm_chr8_14923075_14923964
          Length = 890

 Score =  917 bits (474), Expect = 0.0
 Identities = 486/490 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcaccctcattaacaggcttgatgatggctttggcacttccgggaagatggctgccgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 tttcaccctcattaacaggcttgatgatggctttggcacttccgggaagatggctgccgg 631

                                                                       
Query: 61  tgccaaggctggcgccagatgctctgtagagcatccctgtctgccagtgcatgtgctgtt 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 tgccaaggctggcgccagacgctctgtagagcatccctgtctgccagtgcatgtgctgtt 571

                                                                       
Query: 121 ggaagccttttgcacctgcccccaaggccctttgccatgtggctccatctcaccctcaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 ggaagccttttgcacctgcccccaaggccctttgccatgtggctccatctcaccctcaag 511

                                                                       
Query: 181 ggcgggagacgctgcttagatggccacccgagtagctgggtgttttcagtgggcacctgt 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ggtgggagacgctgcttagatggccacccgagtagctgggtgttttcagtgggcacctgt 451

                                                                       
Query: 241 tgtttctgctctggcatgggagtcacttcaccggcacacagcactcctggtgcacagcct 300
           |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 450 tgtttctgctctggcacgggagtcacttcaccggcacacagcgctcctggtgcacagcct 391

                                                                       
Query: 301 ctctccatcagacatgtggtaagcctcagccagctttgactgtcttacagttgatagtgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ctctccatcagacatgtggtaagcctcagccagctttgactgtcttacagttgatagtgt 331

                                                                       
Query: 361 gtataactgcacctcagctcgaagactaggtcctattacttcagatgaagacgctatcac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gtataactgcacctcagctcgaagactaggtcctattacttcagatgaagacgctatcac 271

                                                                       
Query: 421 ttgaggacccacaaggcccacccagggttacagcgagggcaagtgtttggggtagagccc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ttgaggacccacaaggcccacccagggttacagcgagggcaagtgtttggggtagagccc 211

                     
Query: 481 aaaggtccag 490
           ||||||||||
Sbjct: 210 aaaggtccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)